Array 1 374702-376925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJZ01000023.1 Erwinia amylovora strain EA110 NODE_3_length_421548_cov_52.416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 374702 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 374763 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 374824 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 374885 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 374946 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 375007 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 375068 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 375129 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 375190 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 375251 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 375312 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 375373 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 375434 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 375495 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 375556 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 375617 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 375678 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 375739 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 375800 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 375861 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 375922 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 375983 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 376044 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 376105 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 376166 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 376227 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 376288 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 376349 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 376410 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 376471 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 376532 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 376593 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 376654 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 376715 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 376776 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 376837 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 376898 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 387833-389265 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJZ01000023.1 Erwinia amylovora strain EA110 NODE_3_length_421548_cov_52.416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 387833 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 387894 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 387955 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 388016 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 388077 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 388138 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 388199 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 388260 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 388321 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 388382 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 388443 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 388504 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 388565 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 388626 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 388688 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 388749 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 388810 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 388871 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 388932 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 388993 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 389054 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 389115 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 389176 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 389237 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 398729-399057 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJZ01000023.1 Erwinia amylovora strain EA110 NODE_3_length_421548_cov_52.416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 398729 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 398789 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 398849 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 398909 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 398969 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 399030 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //