Array 1 72002-71614 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNT01000020.1 Comamonas terrae strain NBRC 106524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 72001 28 100.0 32 ............................ GTAGCGCTCATGGTCGACGTGCAGGCGGGCCT 71941 28 100.0 32 ............................ TCGATGAAGCCCTGGCGAAGCAGGCCGCAGGC 71881 28 100.0 32 ............................ GATGTGAATAAAGCATTCGGGCGTCAGGTCGT 71821 28 100.0 32 ............................ ACTTGTAGAGGCTGTCGTGGCTGGCGCCCATG 71761 28 100.0 32 ............................ TTCACGGGTTGCTCTCCCGCAGACACTGCACC 71701 28 100.0 32 ............................ AGGTCAAAGCGCGCAACGCCAAAGTCTTCGGC 71641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGCGAGACGCCCAGGTCGCCGCCCTGAAAGGGCAGGTGCAGGTCGATCGGCAACTGTTGGCGACCGATTGAGCAGGACCCAGAAAAGGCGAAAGCCCCAGGCGTTGCGACCGCCTGAGGCTTTCTTTCCCAACCCTTGCACAACCAAGGATCAGAAAGTAAATGAAGTTTACCAAGATGACCGTAACAGGACAATTGGACGCCGCAGGCGCAGACCGCTTTGCCCGCCGTATCGCCGTGGCCTATGTGCTGGCTGCGCTGGGCATCACTGCCGCAGGTCTGGGTGGCTTGATCGCAGCCATTCGTTGGTGGTGAAGGTGTCGGGGGCGCTCGGCGCGTCGGAGCTTTGGTCAGGGAGCCTGCGCCGGGCCGACGTGTACCGGTGTGGGGCGGTGCGCCAACCCTTTTTCCTGATTGCCTGGGGCGGATGGGAAAAGGGTTGATCGCATTGAACAACCGATTTGTGATGCGCTGGCGGGCACTTGCCTGTGCTAGGCTCCA # Right flank : ATTTCAAGATCGGGCGAGACGCGCCGAACCGCGTTCACTGCCGCACAGGCAGCACCCCTAAAACAGCAGGGTGTCGGCGACCCTGTTGTTTTAGGATTTTTCGGCGCTAGCCCATACCTGGAAAGCGCTGATAGCTATCAAAAACGGACTACTTGAAGGTCATGCGCAGCAGGCCCTGTGCGGGTTGCTGGTCGGCGGGCAGATTGGGCAGGCCGGGTCGGGCGGCCTGCTTTTCGCGGTGCTGGGCGCGCTGGGTCAGCCGCTGGGTGCAGGCCGTTGCCAGCGTGGCCAGCTGCGCATCGGTTGCACTCATGATCTCGCCGTCGGCGATGCGCTGCGGCAGGCTGTTGAAGGAGACCACCATCTGGTCGGAGGCAATCGGCTGGGCATGGGGCAGGGTGGGGCGGCCCTGGCTGTCGTAGTTCAGGTTCAGCAGATAGCGGCTGTGCTGCCACTCGTCTGCATCACCTTCCATCACCGCATTGAACACCGTGCGATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 625811-622899 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNT01000001.1 Comamonas terrae strain NBRC 106524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 625810 28 100.0 32 ............................ TTATACACACCGTATAACAAGGGGTTGCTATG 625750 28 100.0 32 ............................ TCGAACGCGAGCTGCAACTGGCCCAGGCTGGC 625690 28 100.0 32 ............................ TTGGAAGGGCGGCGCATCATTGCGTCGATCTG 625630 28 100.0 32 ............................ TCAGCTTCATAGACGTGCACAGGGTCCACGTT 625570 28 100.0 32 ............................ TATGCGGAATCCCAGGGGCAGGCTGTACGGTG 625510 28 100.0 33 ............................ CTTCATTCCGGCTATTTCTGATCGGCCCTGGAC 625449 28 100.0 32 ............................ TACAGTCGCGTATTGATCAGCCGGACAGGAGC 625389 28 100.0 32 ............................ TACAAGCTGCCGCCTAAGACGCCACCGTCGCC 625329 28 100.0 32 ............................ TACAGTCGCGTATTGATCAGCCGGACAGGAGC 625269 28 100.0 33 ............................ GGGCGGATGGCCGGCGGCGTAACGGCGAAATAT 625208 28 100.0 33 ............................ CTGCACGCTTGATCAGCGGGGCCAGGGCGTAAC 625147 28 100.0 32 ............................ TGATGGTTCAAACACCCAAGTGATCAACAGCA 625087 28 100.0 32 ............................ AGGCCGGCAAGATCCGCTTGTTCTTTGACCGG 625027 28 100.0 32 ............................ TGAGAAAAAACCTGCTTTGCGAGAGCCTGCGA 624967 28 100.0 32 ............................ ATCACTGGACGCTCCCCGTACGGTGTCGCCTT 624907 28 100.0 32 ............................ TCGCATGCGCTGCCAGCGGCTCAACCATTGCA 624847 28 100.0 32 ............................ AAGAAAAGGAGCGGCGACTGGCTTGTGAGTTG 624787 28 100.0 32 ............................ TGATCGTTGTCAACTATGGCCTGAACACAGCC 624727 28 100.0 32 ............................ TTAAGCGGATCAAGAGCCGATGCATTGTGGAA 624667 28 100.0 32 ............................ TCAGCGCCGCAACGCTCCGCAAGTACCGTGCC 624607 28 100.0 32 ............................ TGCAGGTCTGCTCCACGAACGATTCACGCAAC 624547 28 100.0 32 ............................ TAGAGCATTTCCAGCGCTGGCTGGAGACACGT 624487 28 100.0 32 ............................ GCCCAGAAGCCGTACAGGCGCTGGCCGCGCGT 624427 28 100.0 32 ............................ ATCGGACCAGCCCAAGGCCCACAGCAGTTTGA 624367 28 100.0 32 ............................ CACCGAAATCGGGCTCAGGCAGTCCTATCGAG 624307 28 100.0 32 ............................ ATGACACAACGACGGATCGCTTTGGTGTCGAG 624247 28 100.0 32 ............................ ACGACGCCGGCAATCATTTCGCCTTGCGACAT 624187 28 100.0 32 ............................ AGTCGCGCCTGCAGGGCTCGCGCTCGCGTGGC 624127 28 100.0 32 ............................ CGGATCAGAGCCAGGATTCGGGTTGCTAACGG 624067 28 100.0 32 ............................ TCGAGGAGCTTGCGATTGCGGAAGAACGTGGC 624007 28 100.0 32 ............................ CTGATGGCCCATGCGCGCCTAGTCAGATCCGG 623947 28 100.0 32 ............................ TGGTGGTGCTGCACTGGTTGGGTATGGTGGCT 623887 28 100.0 32 ............................ ATACCGGCATCGACTATCAGGCCGGCCGCGAA 623827 28 100.0 32 ............................ TTCCACAGCTGAAAGGCATCCTGTTCAGCAAT 623767 28 100.0 32 ............................ CTCGCCGTTGATCTGCCGGACAGTCAGACGGG 623707 28 100.0 32 ............................ GGCAGATCAACGGCGAGGTGAAAGGTCGTCGA 623647 28 100.0 32 ............................ TGCACATGCAGGGTCATTGACCTTGGGGTCGT 623587 28 100.0 32 ............................ AGTGATGCCCATCCATGCTAGGGAGCGTCAGG 623527 28 100.0 32 ............................ ATCGACGTGCCAAGCGCCTGGACGCAATCCGC 623467 28 100.0 32 ............................ AACGGCGCCGCCAGCAAATCCGAACCAGAAAT 623407 28 100.0 32 ............................ CAATGGTTCGGGGGCGTGTTCGTGCAGTGCTG 623347 28 100.0 32 ............................ TCGCCGAAGAGCAGCCGCCCTGGTGGAAGCGC 623287 28 100.0 32 ............................ AATCCTTTGCACCAATGGTTTCGACAGGCTCC 623227 28 100.0 32 ............................ ATGGCACGCACTCTGTGCTGAGCCCCTGGCAT 623167 28 100.0 32 ............................ ACACTGCTGCCGCCAGAGAATACCGGTGCGCC 623107 28 100.0 32 ............................ TGGTCGAACTCGAACTGCGTGCGCACATCCGG 623047 28 100.0 33 ............................ ACACTCCAGCCTTCCCGGGCGGCATGGGCCGGC 622986 28 100.0 32 ............................ ATAACCATGCCGATGGAGCCGACCGTCACCAC 622926 28 71.4 0 ....A.............G.GC..TGCT | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.4 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : GGCCCTGCAACGGCTGATGGAGCTGCCCTGGCTGCAGGGCATGCGCGACCATGTGCAACTGGCGGCCCTGTTGCCGGCACCACCAGATGCGCCGCGCTGGCAAGTGCAGCGCCGCCAGTTCAAGACCAGCGTTGACCGTTTGCGCCGGCGTCGGATGCGGCGCAAGAACGAAACCCTGGAGCAAGCTGCGGTAGCCATTCCTGACAGTGTGGAACGAAGCCCTCAACTGCCCTTTGTGCAGTTGCGCAGCACCAGTACCGGCCAGCCGTTTTGCCTGTTTGTGGATCAGGGGCCGGCGCAGTCAAACGCAGCGCCGGATCGCTTCAACACCTATGGATTGAGCCTGGGGTCCACGATTCCTTGGTTTTGACCCTTTTTCCGAGGGTTGGGTGGTGCTTCATATAAATCAACCACTTAGCGCGTTCCTCGGAAATTGGGGTATCGCGCTGCTTGGAAGGTTTGTTCTTTAAAAATCAAGAGGTTGCACGATTTAGAGTCCA # Right flank : GATTCAGCCTTAAGGCAAGCTGTCAGCTTGTCTGCCCGAAATTCTCCGAACCCGCCTGTACGCCATCGTCGAACACCAGCGTGCGCTCGGGCCAGCGCATGGCGGCGAGCTTGAAGCGGCGCTGGGGGTCTTCGCCGTTCAGGCGCGCGACCCAGCGGCCGCCGACCGAGTAGTCCACGCAGAATACATTGCCGCGCAGGCCATGCCAGGACAGCGGCGTGGTGTGGCCGAACAGGTTTTCCGCCTGCGCGCCGTGGGCCGCCGCGTCGCCGGGCAGCAGGCGGCGCCAGTAGTGGCCGACGATGACGGCGGTGTCGTCGGCGTATTCATCCCACCAGGCCACGCGCTCCACGAAGCGCCATTTGCCGCCTGCGTAGAAGGGGGTGCGGCATTCGCGCTCCACGCCCGTGGTCAGCACCTTGAGCGGGTTGACCATGGCCTTGGCCAGTTCGTTTTCGCTGTGCGCGGCCAGGAAGGGCGGTGGTGCTTTCGGGTCTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //