Array 1 97043-95061 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAEO01000043.1 Escherichia coli strain KCJK1705 NODE_9_length_166464_cov_13.2888_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97042 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 96981 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 96920 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 96859 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 96798 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 96737 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 96676 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 96614 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 96553 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 96492 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 96431 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 96370 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 96309 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 96248 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 96187 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 96126 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 96065 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 96004 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95943 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95882 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95821 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95760 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95699 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95638 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 95577 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95516 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95455 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95394 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95333 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95272 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95211 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 95150 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 95089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123521-122760 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAEO01000043.1 Escherichia coli strain KCJK1705 NODE_9_length_166464_cov_13.2888_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123520 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 123459 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 123398 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 123337 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 123276 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 123215 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 123154 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 123093 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 123032 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 122971 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 122910 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 122849 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122788 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //