Array 1 163348-160817 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNW01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163347 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163286 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163225 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163164 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163103 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163042 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162981 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162920 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162859 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162798 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162737 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162676 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162615 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162554 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162493 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162432 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162371 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162310 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162249 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162188 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162127 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162066 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162005 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161944 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161883 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161822 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161761 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161700 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161639 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161578 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161517 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161456 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161395 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161334 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161273 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161212 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161151 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161090 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161029 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160968 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160907 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160846 29 93.1 0 A...........T................ | A [160819] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181470-179855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNW01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5564063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181469 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181408 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181347 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181286 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181225 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181164 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181103 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181042 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180981 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180920 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180859 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180798 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180737 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180676 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180615 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180554 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180493 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180432 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180371 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180309 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180248 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180187 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180126 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180065 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180004 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179943 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179882 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //