Array 1 5325-6634 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXI01000090.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU07-4-21-1 NODE_90_length_14084_cov_19.3297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5325 29 100.0 32 ............................. CCTTCGTTATTTACGACATTAACATTAACCGT 5386 29 100.0 32 ............................. CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 5447 29 96.6 33 ...................A......... GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 5509 29 96.6 32 ............................A GCAGATTGGTATCTGGTACGACGACTGCCGCC 5570 29 100.0 32 ............................. ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA 5631 29 100.0 32 ............................. TCCACTGTACCGCCGACAGGACTTTTTAACGT 5692 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 5753 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 5814 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 5875 29 100.0 32 ............................. CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT 5936 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 5997 29 100.0 32 ............................. GGGGAATGATGAAACGAATTAGTAAAAACAAA 6058 29 100.0 32 ............................. AAATGGCATAGCCACCCCAGACAGTGGCTTCT 6119 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 6180 29 100.0 32 ............................. CCAGTAACGCTGGCGTGATAATTTTGGTCGCC 6241 29 100.0 32 ............................. CAATACGACTGGACTGGATTTGATTCATTAAC 6302 29 100.0 32 ............................. CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG 6363 29 100.0 32 ............................. GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT 6424 29 100.0 32 ............................. AAACACCAACATTACGGCACGCAAGAGGTTAT 6485 29 96.6 32 ........T.................... GTTGGAGGGCGGTTCTGATGGCGAAACTTATC 6546 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 6607 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACACTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2173-2873 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXI01000050.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU07-4-21-1 NODE_50_length_35006_cov_20.7379, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2173 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 2234 29 100.0 32 ............................. GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA 2295 29 100.0 32 ............................. GTACGGAAATTTGTGTCAGATATTGCCGGGAA 2356 29 100.0 32 ............................. TGCCCACAGTTCGTCGTGAATTGCGCAGGATA 2417 29 100.0 32 ............................. GTTCTCAATAAATTTTCCCGGCTGCCGGATCT 2478 29 100.0 32 ............................. ATTGGGACCATTCCAATGGTCAGTTTCACGGA 2539 29 100.0 32 ............................. AAACCAGAATTGCTGAAGTAAATTGCAAAAGA 2600 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 2661 29 96.6 32 ............T................ ATATTTTGGCAACTCGTCGTACATTATCGCCA 2722 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 2783 29 100.0 32 ............................. TCTTTGTGGTAAATATGGAATCGATTAACCCC 2844 29 100.0 0 ............................. | A [2871] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGCAGCGTAGATATTGGCTGGCTACATAGTGAAGAGGCGTGTCTTGAACATATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCTAGTGCTGCGCATTCTTGC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //