Array 1 29141-29383 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOS01000025.1 Ligilactobacillus ruminis strain BIOML-A3 scaffold25_size34727, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 29141 24 100.0 49 ........................ TGACTCAAAATCCGCCTCGCGCGAACCCCAAAGTAGAACAAAATCCCTA 29214 24 100.0 49 ........................ TGCTCCCAAATCCAGTCCGCGCGCCCCCAAAAGTAGAACAAAAATCCCC 29287 24 100.0 49 ........................ CGCACCCAAATCCGGCCCCTGCGCCTCCGAAAGTAGAACAAAAATCCCC 29360 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 4 24 100.0 49 AAAATTGAAAAAATGTTCTACCGC # Left flank : ACGCAGACGCTTCAGGTCAGGTTCCGCAAGCCAGGTCTCGGTTGGCGCACGATCATCGTGACGGTCCTGACGATTTTCTCATCAGTCGGTGTCTACGTTGGCAGATTCCTGCGACTGCACACGGCCTACCTCTTCTTTGATCCCGGTTTCGTCATCAAAGAACTTATCACCATGTGGAGTCCGCGCATGCTGGCCTTCGTTTTCATGATGTTTCTTCTGCAGATGACGGTCTGGGTTTCGATCACGATCGGCCGCATCACGATTACGAACCTCGATTCAAAATATAATCTTCAATGAGTCAGACGTTTGTCTGGCTTTTTTGTTAATCGCAGTCCCTCTTTCGCTGCAGCCGCTGATTTGAAGCCGAAAAGCGCCCTCTTCGGTCAAATCCAGTGCCCGCGCCCACCAAAGTAGACAAAATACCGACTTTCTCCTAATTTTTGTCTACTCCCGCGCCAAAATTCGGCCCGCGCGAACCCGAAAGTAGAACAAATTCCCTA # Right flank : CCGACTCAAAATCCTCATTCACCGCCTGAAGACAATGCTTTCACCACGCCTCCGCCTCAGCCTAAGATAGCGCTTTAACCTCCTCTCACGCGCGCTGCTCCCCCACATCACAACCACATCCCCCACCCACGCACAAAAAAATAGCGAGAATTTCCACCCAGAAAATCCTCACTATTTCGTCTCTCGATCACAAAACCAAATCTTAGTCAAAAACCTTAAATCTCACGTCATCTTCCAAAAATTTCTTGTCGCCCGCAGGAGCTTCGATCGACCCGAACGGCATTTCGGCACGCAGTCTCCAGCTTTCCGGAAGATCGAATTGCCGCTTAATCGCATCATCGATCAACGGATTATAGTGCTGAAGCGAAGCACCGAGGCCATTTGCTGCCAAAACTTCCCAAACGGCCTGTTGTGCGCCGCCGATGCCTTGTTCCGCCCAGTCGGCAAAATTGTCGGCGTAAAGCGGAAAATCTTTTTCCAATTTCTTGACGGTTGCTGTT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAATTGAAAAAATGTTCTACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 9548-9364 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOS01000008.1 Ligilactobacillus ruminis strain BIOML-A3 scaffold8_size78422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 9547 36 97.2 38 ................T................... TTCCTCCTGAATTTGTGCTATAATATAAGTGATTCATA 9473 36 100.0 38 .................................... CTTCATTTCTTTTTTCCTTCTTTCAACTTTATGTACTT 9399 36 94.4 0 ...T.................G.............. | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 97.2 38 GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Left flank : TTTTCTTTGGCAATTTGTTATCGTTATTCTCAATGAGCGCAAAAAAGAATAAACTGAAAAAATCAGTCTCGACGCTGATGTCGATTTTGATGCAAAGAGGGTATTTTCAATGGAAGAAGAACAAAATCCGTTTCAAAAAATGGCGGAAAAGCATAAAAGCGAGCAAAGAAGAAAAGTTGAAACTGCATATGAAGCGTAAAAAGAACTGATTCAAGAATTTTGTGAGAAAAAGCGTGAGCTGAATTATCAAAAAGGATTAACTGAAGCAAACTTGCAATTGAGAACATATTTAACTATTTTAAAAGATTGGTAATCAAATGATATTGAAAAGATTGATTATGTATTTTATAATACCGACAGGGGATTTTTTCCCTATTTTATCCGTCATTACTTGGTTATAAAATGGACAAGTCTTTGAAAAGCTGGGTGTTTCTGGCTTGCTTTTTGGGCGTTATTTTATGGACGTACCCCCCATTCTGATGCCATTTTGATATTTGATG # Right flank : TAAATTATCGTAAAGAGAGTTTATACACAGCCTTTCTTCAGCCTGTACTGACCGAGGCTTGTAAATACTCGAATATTTATTCACAGTCAGACAATAATTCCATAAGCCGCACCTTGCAAACATCGCAGAAACAATTTTGCTCAATGCTCACAGATTATGACATTGTTTTTCGCAATTATCTGGCAAACGAGCTGTTTTCCGACCTGATATCGCCTGAAGCAGCATCCACTAAAAAGATTATTGAACACATGATTATCAAAATGCAGTGGATTATGATTGAATACACGGCTATACGTCAAAGTCTTTTCTTGTGGTACAGTCACAATGCCAATAGTTCGTTGACATATGAAACCATCAGAGAGCATATTGTCATCATCTCACGCATGACAGGATATGATGATGACATACGCGAATATCTTGAAAACAGCTTTGCAAAGCTCATATGGGATTGGGGGCTACGCCGCACTCATTATGGTAATTAGAAAATAATTACAAAGGAG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 64798-64220 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOS01000008.1 Ligilactobacillus ruminis strain BIOML-A3 scaffold8_size78422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 64797 28 100.0 33 ............................ TGACGACGTTACTATCAGCTGGCCACCGTCCGG 64736 28 100.0 33 ............................ CTCCCTTTGGGGTCGTTGGGCTATGACCTCAAA 64675 28 100.0 33 ............................ TTAAAGTGCGGGCTCTTTTTGCAACCGAAAGCG 64614 28 100.0 33 ............................ TCGATTATACAGGATTCATGACAACCACGGCAA 64553 28 100.0 34 ............................ TATTTTCGATGTCGTCATCCGCTTTTTGTCTCAG 64491 28 100.0 33 ............................ CACAAGAAGACGTGGAAGAGAGCATATCAGACC 64430 28 100.0 33 ............................ CAAGGTCTCCGTCAGCGTTTGTCTTGATGTCTA 64369 28 100.0 33 ............................ TTGGTGGTGGGATAATGAACATGATTTTCTCTA 64308 28 100.0 33 ............................ TGAAATACAAAATCACGTGCAGAACATATAGGG 64247 28 89.3 0 ........................T.AT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.9 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TGCGGGGGTGATCCTACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGA # Right flank : GAAGTTATCATAGATAAATATATGAAAAAATTAATGAGACATACTGTTTGAATATTCCTTTTCTGACAATTTTAAACCGCCATAAAACGACAATTTAAATCCACCTTTGACAATAAAATTGATAAAATACTTAATTGCCGCAAATTTGCGGTAATTAGGCTTTTTTTAAAGCGTATACTCAAGTTATAGCTGAAATTTTCGTATTGTATTGGAGGAATTCAAAATGAAGGTTAAAACATTTTTATCTATAGCATGTTTGAGTCTTATGCTTGTCGGTTGTGGTAACGATACTGTTGACAATTCTGGCAAAAGTGTAGAATCAACCAATAATAAAGTTTCGAAAGTCAAACACAAGAAACCTAAAAAAGATCCGCGTGAGGTCGTAAATGGAGAACTTCTTAAAGTCGGACAATGGTGTAATGATGATGAGCAAGGGAAAATGGAGTTGTACAAAATTTGTGTGCCTGGGACGGTAATTGATGATGGATCAATCAAGTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 65740-65284 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOS01000008.1 Ligilactobacillus ruminis strain BIOML-A3 scaffold8_size78422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65739 28 100.0 34 ............................ TAGCGCAGAAAATTGCGAGTTTGTGAGGTGGATA 65677 28 100.0 33 ............................ CGGGAACGCTATCAAGAATTACGTACTCTTCGG 65616 28 100.0 33 ............................ TTGAGGTTAAATATTTTGGTGGTCAAAAAACCA 65555 28 100.0 33 ............................ TAATCGTATTGAATCCCTCGTTGATTCTAAAGT 65494 28 100.0 33 ............................ TCAATGTACCAGCTGTTGCGGTTTTGTTTTGCT 65433 28 100.0 33 ............................ TGTTGCCCCCGTTTATCCGTCTGATAGCGTTAA 65372 28 100.0 33 ............................ TGTTGACATCTGGAATCTGCGTGGCAAATCAAC 65311 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTTACCAATGATGTCATTATATCTTTGGCAGCAGTAAAGGGAGCCACTGGTGATCGGTTCTACAAACTTATAAGGACAAATAACTTGATATCACCCAAGATAGTTGCGTTAACAGGTATTACGAATGAAAAGCTTGAGAGTGAGGGCGAGGACATATATGCTGTTTTGAATGAATTTAAAAAATTCATAGAAGATGATATACTGATAGGGTTTAACATAATGAACTTTGATTTAAGATTTATTAATGCCGCAATGATAGCAGCCGGAATAGAAGAAAAAATGAATAATACAATTATTGATTTGTTGCCAAGGATAAAGAAGATAGATTCATTTTTGGATAATTATCGTTTTGAGACTGTGTTAAGGGCCTATGGTGTAACTAATAATCTTCCGCATAATGCTTTGTCAGACTCCATAGCTTGTAGGGAGTTAGCTGTCAAACTAATGAAAAATGGGAAGTTGTCATTTTAGAAATGCCGATATATAAGGGATCTTTTAGT # Right flank : TACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGAGTGTTCCCCGTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //