Array 1 56643-58504 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTAK01000001.1 Streptococcus mutans strain ATCC 55676 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 56643 28 100.0 33 ............................ CAGTATTAAGCCAATTATTAATTTCCTTTTCAA 56704 28 100.0 33 ............................ TAATTGGCTTAATACTGTTCAGAATATTAGTGA 56765 28 100.0 33 ............................ CAAATCCCAAATGCCAGCCAACCAACAAAATAC 56826 28 100.0 33 ............................ TACACGTTCACCGCCAGTCGCCTTTTTCTTACC 56887 28 100.0 33 ............................ TTAGATTTCCGTTTAAAAACGTATCACAATAAA 56948 28 100.0 33 ............................ TAAGCATGGCTTAGGTGGATTAATCAAAGGTGC 57009 28 100.0 34 ............................ ACAAGTTACTCAATAAAGTCAATGTTGACGGTCA 57071 28 100.0 35 ............................ ATAGAATACCATCTTCATAGACATACTCTGACTGA 57134 28 100.0 33 ............................ TATGTAATTTCTGTTTGGGATAAAGTTGTAGCT 57195 28 100.0 33 ............................ TCTTAATCATTGATAAAATGACTGCGGTTATCA 57256 28 100.0 33 ............................ TATATTGACCGACATAAAAAACGCTTCACAGGA 57317 28 100.0 33 ............................ CAAAATGAGGGTTTAGAAAGCAAATAAATTGGC 57378 28 100.0 33 ............................ TAGGCTTTTCACCACTAACAACATAACCGCCTT 57439 28 100.0 33 ............................ TATCAAGCAACTTCAATCCGCCTATGACTTGCG 57500 28 100.0 33 ............................ CTACTTGAACAAATAGAAACGGTACTGTGAAGA 57561 28 100.0 33 ............................ TGTCTGCGTTTTCTATTTTCTTTTATATCTAAA 57622 28 100.0 33 ............................ TGCTTCTTCTACACTTGGAGTCAGCATCCAATC 57683 28 100.0 33 ............................ CAAATACGGGGCAGCAAGCTTTTTAAAACTGGA 57744 28 100.0 33 ............................ TAGGTGCTCCGCCAGAAAGCTCTTCATGGTACA 57805 28 100.0 33 ............................ TAAGTTCTATGGCATGTTTGCATTCAATTTGAG 57866 28 100.0 33 ............................ CGGAAAGAAATACCTGAGCCACAGAGAGTTAGC 57927 28 100.0 33 ............................ TACCCAGAACTCAAAAACTACCTAGAAGTATTG 57988 28 100.0 33 ............................ TAAGACCCTTTATAGCCTTTATAAGCATTGACA 58049 28 100.0 33 ............................ TATAATTGAATTCCTTGAAATTGTCATATAGCT 58110 28 100.0 33 ............................ TAAGCGCATTCAAGTGCTCGAAAGCTATGCTGA 58171 28 100.0 33 ............................ TAACAACATTATCAATCACAGTTTCCATTAATG 58232 28 100.0 34 ............................ ACGTAAACATTCAAGCCAAAAGAAGTAAGTCCGC 58294 28 100.0 33 ............................ TAATCTTTATCAAGCCCACACGCCAGCGCTTTA 58355 28 100.0 33 ............................ TAAACCGCCTCGAGCTGGAGATTTGTTTGTAAT 58416 28 100.0 33 ............................ TACCCTGAAGCTGCGTCTCTGTTGTTACAGAAA 58477 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 31 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTATCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160128-161351 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTAK01000001.1 Streptococcus mutans strain ATCC 55676 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 160128 36 100.0 30 .................................... AAACGGAGACACAAAAGCGGAAGTGATAGC 160194 36 100.0 30 .................................... TAGCTGTATACATAATTATTGGCAATCAAT 160260 36 100.0 30 .................................... CCATCTCGTAGTCCAGTTTCTTACCACACT 160326 36 100.0 30 .................................... ACTGCCTGTCTCAAATCACCAAAATATAAT 160392 36 100.0 30 .................................... AGTGCACTAGCAAAATTAAGAACAAGTTCA 160458 36 100.0 30 .................................... ACGAAATTTTGAAAGGACTCGAAAACGACA 160524 36 100.0 30 .................................... AACAGTATCAAGCATTGTGAAACCATCAAT 160590 36 100.0 30 .................................... CAACGTATGATTTTGATTTTGGCTAATTGC 160656 36 100.0 30 .................................... CTGTTTTTAAACCAAAAGATGAAGCTGACT 160722 36 100.0 30 .................................... TACAGATGTAAGCACTGCTCTTTCTGATTT 160788 36 100.0 30 .................................... TGCACATTTTTTAATTTTTTCAGTCATTAT 160854 36 100.0 30 .................................... GACAAACTTTTTAATCATCGACAACTTACA 160920 36 100.0 30 .................................... TGGAAAATTTGTAATAAATTAGGAAAGATG 160986 36 100.0 30 .................................... TGGAAAATTTGTAATAAATTAGGAAAGATG 161052 36 100.0 30 .................................... TCTGCGTTTTCGCCGATAGCATAGATTTTC 161118 36 100.0 30 .................................... GTCAATGCTGAAATCGGAAGTAATAACTAT 161184 36 100.0 30 .................................... TGGAAAATTTGTAATAAATTAGGAAAGATG 161250 36 100.0 30 .................................... ATGTGAAAAGAAAGTAACTACTACATTTGA 161316 35 75.0 0 ..........CA.......A.TG..-T.A.T..... | A [161332] ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTGTTGGCATCTTATCTTGATGAAGGGTTGGTTCTACCCATTTCAAGCGATATTCAGAAAATATCTGTTGAAGATGGTTTTGCGACCATGATTCAAGCTGATCCTAGTCCTTATCTCAAAAATAACAAAGCTATTCGGAAAAATGTTACCGTGCCTGAGTGGTTGATACGATTAGCAGACCGTGACCGAGTAAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAACCTTTTAAAAAAGAATCATTTTGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATGTCGAGACAAAAATTGGTCCACGAG # Right flank : CGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAATAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCGATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21984-22811 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTAK01000005.1 Streptococcus mutans strain ATCC 55676 Contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21984 32 100.0 34 ................................ TTTTAAAAAAACAGGCATAAAACATGAAAAGTTT 22050 32 100.0 34 ................................ ACGCGGGTTCCGCGGCTTTTTAAAAGAGACCGGG 22116 32 100.0 36 ................................ TGAGATAGTTAGAGACCAAATCCCGCCGCTAGAAAA 22184 32 100.0 33 ................................ TTGGGTGGTTTGAACGGAGAACGGCTATCCAAA 22249 32 100.0 35 ................................ TAAATGGCTAAGTTTTATGAGTAAGCGATTAGAAA 22316 32 100.0 34 ................................ TTGATTTATTCGCATAAAAGAGAAGGGAGATAAA 22382 32 100.0 35 ................................ GACAATATCTTGATATGGTTGTTTGATCGCATTTT 22449 32 100.0 35 ................................ TGAAATCTGTCTAGCGGATGCGTTATGCTGATTAT 22516 32 100.0 36 ................................ GCTAAATAGCAAAGGAGAAGATATGAGCAATTTACT 22584 32 100.0 34 ................................ TTTGTTGCTGATGGCTGTTATGAAAAAGATCGTT 22650 32 100.0 33 ................................ ATCTGCATTAGATTAGGCTTAACATAGTAGCGG 22715 32 100.0 33 ................................ AGGAATTGGGGGCTTTCGTTTAGGAATGGAAGC 22780 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAAACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTGAAATCAATCGCATAGTATATGAAATGAGTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTGGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTTCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //