Array 1 3072297-3071781 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPCO01000001.1 Escherichia coli strain AR_0048 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3072296 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 3072235 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 3072174 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 3072113 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 3072052 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 3071991 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 3071931 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 3071870 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 3071809 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCAGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3099123-3097996 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPCO01000001.1 Escherichia coli strain AR_0048 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3099122 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 3099061 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 3099000 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 3098939 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 3098878 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 3098817 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 3098756 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 3098695 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 3098634 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 3098573 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 3098512 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 3098451 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 3098390 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 3098329 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 3098268 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3098207 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3098146 29 89.7 32 .A.C......................T.. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3098085 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3098024 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //