Array 1 232459-229804 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJSE01000008.1 Citrobacter braakii strain HH10 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 232458 29 100.0 32 ............................. CTGGTGTCGCGGACACGCTTTTTGGCGGCGAC 232397 29 100.0 32 ............................. CAGCAGCAGAGCCTGCAGGCATACGTTGAGCG 232336 29 100.0 32 ............................. GGTAAGCATCAGAGGAAAGCGGAAAGGGAGCA 232275 29 100.0 32 ............................. CGGGTAGTCCTAATCGATTACCCTGTGTTGAA 232214 29 100.0 32 ............................. GTTGGTAATATTGTTTTATTACCGTTGCAAAA 232153 29 100.0 32 ............................. GAAATATCAACATGATTAAATTTACTGCTATT 232092 29 100.0 32 ............................. TACCCCTGCGCGAAAATAGTGAATCTCCGAAT 232031 29 100.0 32 ............................. GCGGCGATAATGGCGGCGATAATGGCGGCGAT 231970 29 100.0 32 ............................. GCATTGGGAGGACGTAAATAAGGATTTTTACG 231909 29 100.0 32 ............................. CGCGAGCTACGGGAATTGCGCCGATCCTATTT 231848 29 100.0 32 ............................. TTCCATTTTGGACTCCCCATAGATTTTTTTTG 231787 29 100.0 32 ............................. GTTGTCTTGGTGTGACCGTTAATAGCTATCGT 231726 29 100.0 32 ............................. CCGATGAAAACGAGAGCGGTCAGATGTACGAG 231665 29 100.0 32 ............................. GCTCAACAGGTGCTCCCGAGTCGTCTGTAGCG 231604 29 100.0 32 ............................. GGGTAATCAAATTGTTACGCGATGGCGTAACG 231543 29 100.0 32 ............................. TTTGTAATCTATTGCTGTTCCGTTCCATGAAA 231482 29 100.0 32 ............................. GCGGGCATTGCATCAACCAATGCTTTGTCAAA 231421 29 100.0 32 ............................. CCGGGCTGGTGGAGAATACCGGGCGGCTCGAT 231360 29 100.0 32 ............................. TATATGAAAATTAAAATTTCAGGGGTGTTAAA 231299 29 100.0 32 ............................. TGTCGCTGGCATTTGCCGTCCTCCCTGTCTGT 231238 29 100.0 32 ............................. CGCGGCGCACGTTCGGCAGCGTGGCCGAGCTG 231177 29 100.0 32 ............................. GATTATTTCGAAATGGCGCAAAACCGCCACGA 231116 29 100.0 32 ............................. TAGAGTGTATTCATTTGGCGTTATCGCTATCC 231055 29 100.0 32 ............................. ACATCCAGAACCGTTTTCAGCGGACTCCTGAA 230994 29 100.0 32 ............................. CATCGGCGATATTCCCGGGCCGCTGTCTCTCA 230933 29 100.0 32 ............................. GCTGCAACCTTGTCGCACTGCTCCATTGCATA 230872 29 100.0 32 ............................. TTGTAACGGGGAAATTAGGCTCGGGTAAAACT 230811 29 100.0 32 ............................. CGATCGAGTCTGTTTTACTAATGGCCTCAACA 230750 29 100.0 32 ............................. ACTGGTGCGCACAATTTTCGCGCACGCCGGGT 230689 29 100.0 32 ............................. CACCTCATGCAACTCGGCCAGATCCGCCTCCA 230628 29 100.0 32 ............................. CGCAACCTGACAGGTGGCGATTATGACGACGA 230567 29 100.0 32 ............................. AATATCGAGCTAGTTTGCCTACACTGATTGAA 230506 29 100.0 32 ............................. CCATCTGGCGCTGGATTTTGAAGCGTCCGTCA 230445 29 100.0 32 ............................. GAACACCGAAGTAGCGGAGCAGTTAACCGCTA 230384 29 100.0 32 ............................. CAACGTATGGACATTGCCAGCATCCTGCAATC 230323 29 100.0 33 ............................. GGTTTCTGGATTGGGTGCTGCTGGTGGAAGGTC 230261 29 100.0 32 ............................. ACTTGAGCTTGGGAATTATTGCTCCGGTTGTT 230200 29 100.0 32 ............................. GCAGTACCCGTTATGCGCTGGATTGGCAAACG 230139 29 96.6 33 ............................A TCAACAGCACATTGCAGCGCGAAGGCTTCCAGC 230077 29 100.0 32 ............................. CCAAGAAGCTAAAGCCGGCACCAGACGCAAAC 230016 29 100.0 33 ............................. CCGCAGAGAAGCGCATAGCAGAACTGGAGGCGC 229954 29 100.0 32 ............................. GGGCTTGGGTCCCTGGCTTACGGGGAAAAAGC 229893 29 96.6 32 .......T..................... GCCACGCCGTTCGGGTCGATTTTGAGCGAAAT 229832 29 93.1 0 .........................T..A | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGACGCTGGCGAAATAGACCCTCCGCAGCCTGCGCCAGATATGTTGCCGCCTGCAATACCGGAACCGGAATTGTTTGGAGATGGTGGTCATAGGGGGCGTGGTGGATGAGTATGGTTGTCGTTGTAACGGAAAACGTTCCGCCGCGTCTGCGAGGGCGTCTCGCCGTCTGGCTGCTGGAAATCCGTGCGGGTGTTTACGTTGGTGATACCTCTAAGCGAATTCGGGAAATGATTTGGCACCAAATCATACAGTTGGGCGGAGCGGGAAACGTTGTGATGGCCTGGGCGACAAACACGGAGTCAGGTTTTGAGTTTCAAACCTGGGGAGAAAATCGCCGTATTCCGGTAGATTTGGATGGACTTAGACTAGTGTCTTTTCTTCCTTTTGATAATCAATAGGTTGAGTGTTCTTTAATAAAACGGAATTGTTGTTCCCAAGTTGGTAGATTGTTACTTGATGAAAATTGCAATAGAAAACAGTTATATATATTTAGT # Right flank : CTTTGAAAGCAGAAATATTATGGAGCTGGATGGGTTACGAGGATTTACCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGTGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCACCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //