Array 1 2325468-2328970 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGXA01000002.1 Pseudobacter ginsenosidimutans strain DSM 18116 Ga0310513_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================== ================== 2325468 30 100.0 36 .............................. AAAATTCTTGCGGCTTTGTTGTCATGATGGTTGACG 2325534 30 100.0 35 .............................. TGGTTTGCGGTCCACGTTAGAAAACCAGATGCTGG 2325599 30 100.0 35 .............................. CAGTTCAATCAGGCAGCCAACTACATCTATGAGGA 2325664 30 100.0 37 .............................. TATTGCAAGCAGCCTCAATGGCTTTATGCCTAATTTC 2325731 30 100.0 35 .............................. AAGTCTGTAGGCAAATCAATCTTCATAATGTATTG 2325796 30 100.0 36 .............................. ATGCTGATCTACAAGCCGCAGAACTTTGATCCGGCG 2325862 30 100.0 37 .............................. TCCATTGAATTACTAACCCCAATCCGGCCATCAATAA 2325929 30 100.0 36 .............................. GTAATTAACTGTGCTAGCCCCGTGTGTGCTGATAAT 2325995 30 100.0 36 .............................. TATAGATGATGGCAGCGGCAAGCGTGTATGGGCGAA 2326061 30 100.0 34 .............................. TTTTTGAATTTTCATTACTTAGGTCGTTTAAGTG 2326125 30 100.0 34 .............................. TGAAAGAACTACTTTATTTCTATGCAGCAATAAG 2326189 30 100.0 36 .............................. TCTGTGAAACAATCTCTGATCCCACTTCCCCAACTG 2326255 30 100.0 36 .............................. AGAATAGGGTTTTCCTTGCAGGAGGGAAAAGCGGGT 2326321 30 100.0 36 .............................. TAAAAAAAGAATAATTATCTTCTTCTGGTTTCTTTC 2326387 30 100.0 37 .............................. AAAGAGATTGGCCTGGTGATCCAGCTCGGCGGCGCGA 2326454 30 100.0 36 .............................. TATTGACCTGTCTTGCCTTTTCTGGCGATTGATTCC 2326520 30 100.0 35 .............................. TGAGTAACGACACGACTCATTTTCTTTTCTTTAAA 2326585 30 100.0 35 .............................. CAGGTCTTGTGCTGAATGCCTGTCCTTGAATGGTG 2326650 30 100.0 37 .............................. GTATTAATAAAAACTGAGCCAAATCCGCTTTGGTCAG 2326717 30 100.0 37 .............................. TGGCAAAGCTCAATTACCAGGGCGCCTGCAGAGCAAT 2326784 30 100.0 36 .............................. TTGGTTTGAATGGTGGCACTTTCCAATGGACTTCCT 2326850 30 100.0 38 .............................. GAGATCATCAAAGACTTGCAGGCTGTTAGCACTTCCTC 2326918 30 100.0 36 .............................. GAGATATCGCTTACCAAATTCTCTACGAACAATGTG 2326984 30 100.0 36 .............................. CGTTTGATTATCTTTCCTGCTTGGCGGCTCATCAAT 2327050 30 96.7 36 ....A......................... GGGCTTTAATACGGAATTGCCGTCCGGCTTTGTAAA 2327116 30 100.0 35 .............................. TTTGAAAGCGTGATCAAGACTTTGGACACCGTCAG 2327181 30 100.0 35 .............................. AAAGTTTCAGAAGTGGAGATGCGTAGGGTGATAAA 2327246 30 100.0 35 .............................. GATAGTAACCAGATGAACACTGCTGAGTATGTTCT 2327311 30 100.0 36 .............................. GTGCGGAGCGTAAGTTTTCCGTCTTTATTCCAGAGC 2327377 30 100.0 35 .............................. GGTGGTAAATGGATGCTACTTATTAATTAACGGAA 2327442 30 100.0 36 .............................. GGGCTTTAATACGGAATTGCCGTCCGGCTTTGTAAA 2327508 30 100.0 35 .............................. TTTGAAAGCGTGATCAAGACTTTGGACACCGTCAG 2327573 30 100.0 35 .............................. AAAGTTTCAGAAGTGGAGATGCGTAGGGTGATAAA 2327638 30 100.0 35 .............................. GATAGTAACCAGATGAACACTGCTGAGTATGTTCT 2327703 30 100.0 36 .............................. CCAGCAGCAGGATACTATACATTCGCATCGATATTG 2327769 30 100.0 36 .............................. ATGGAAGCCGTATATACATCGATGGCACCCGACACT 2327835 30 100.0 36 .............................. TGGACTGGCAACGAGATCCCGGACAACCTGTATGAT 2327901 30 100.0 37 .............................. GTGTCCACTGCACAGCAGGCCGCTCTCGATGATACAG 2327968 30 96.7 36 ........A..................... GAAGGAACGTTTGCCAGGATCCGGACAGCATCTTTG 2328034 30 100.0 36 .............................. GAGTAAGTTGTGCCATTCTTTCCGTTGTGTTTCTTC 2328100 30 100.0 36 .............................. TTCAGTATTTTTGAATCCTTTCGGCTGACCGTCCTG 2328166 30 96.7 35 .................A............ GGGATAGTCGCGGAAGCAGTGAGCGCAGAAGTACC 2328231 30 93.3 36 ....C...........A............. ACTTGAGCAAATAATTGTGCCGGTATAGCCACCAAA 2328297 30 90.0 36 ..T......T..T................. ATCATCAAGGAAGCGATTATTAACAATGCCGACTGT 2328363 30 90.0 35 ..............T..A.....G...... AACGGGATCGGTTTTATGCGAAGGAAATCTCCAAA 2328428 30 96.7 37 ..A........................... ATTTTGGCCGAAGCGATCTGTCCTTCAAGCTGCTCCA 2328495 30 100.0 94 .............................. ACATGAAAGGCAAACTATCAAACGCTAAGACTGGTCTTCATTGTACAAAAATTTAAATCCTCTTTACAGCGTCTGGGGCGCCGTTATCTAATCT 2328619 30 93.3 29 ..........C..............T.... ATATTTGCTGTTCATAAACAATTATTGAA 2328678 30 93.3 36 ...............G.............C AATGTTGATGTATATTTCGACAATCTTCAGATTATG 2328744 30 80.0 37 .........T....GG..GG........T. AGTATCAGGCACAAAATGGGTGGCGATAGCTTCGCGC GT [2328765] 2328813 30 86.7 98 T.AA.......G.................. AATATCAGGCACTAATTGCCCGGAGATAGCTTCGAGCCTACTAATCATACAAGAATTGCAACCCTCTTTACAGCGCTCGAGGCGCCTTTATCTAATCT 2328941 30 80.0 0 T...........T...AA..A.G....... | ========== ====== ====== ====== ============================== ================================================================================================== ================== 52 30 97.9 38 CTGTTAATCGTACAAAGGTTGAATTGAAAT # Left flank : AACCTTTTAAAGCCTGGTGGTAGTATGTACGTAATCCTGGTATATGACATAGGAGAAAAACGAGTAGGAAAAATGTTAAAGCTATGTAGGCAGTATTTGAACTGGATACAGAACAGCGTGTTTGAAGGAGATATAACTGAGGTTAAGCTTAAGGAATTGCAGCAAAGGGCAAAATCGATTATGAAAGTTGAAGAAGACAGCATTATCGTATTTAAAAGTAGGGATTTGAAATGGCTGGAGAAGGAAATCGTTGGAAAGGAAAAGAACGAACTAACCAATTTTTTGTAATTCATGTTGTCGGTGAAGGAAAAATCACTAGTCAAAAAGGTCGGGAAATAATGGAGTCTGATATAAATTGAATAAAAAAAGTATTTTTAAAGGTTGTCGATGTACTCGGAAAATCTTATTATTGGACATCGACAACTTTCTTACTAAGTAAGGCGAAATTTTTATTATCAAAAAGCTTTAAAAACAAGGCTTTATAGTCGTCGATTCGGCGG # Right flank : TAATGAGACTCCTGATTGTTCTCATAAATGCGCCAGTCGAATTAAAGAAGGTTTTAGAAACTAACTTAAAGTAGCACTTGATGCCACCAGAGTAGTTTTAATTGGTTCATTTTAGGGTGGCTTGCCAATCCAGAATCCCTAATAGACTCTTAAACTTCATGCATGGAGTGATCTTATATGTATCGCAGCCTCATCACCAAACAAAAACTGCCCTCATAATACTTCAAAGAAATTCGGTCAGTTTGAATTCGAACTTAAAGGAGAGAAAATAATTAGTATCATTGAGGCAAAATAGGCCGAAGAATAAGATAACAATCATGCAAAACATCGCCACCACCATAGATCAATTCAGAGCAGCAGTTCTGGACTCCAATACAACCACCCTCCACCAACTATTATCCGATACACTTAGCTACGGTCATTCCGATGGCCACGTAGAAGGAAAAAATGATTTCATCCAAAAGATCAGCGACGGAACCTACAAGTTCCTCACTATGGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACAAAGGTTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //