Array 1 471191-470560 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPB01000007.1 Streptomyces sp. CB00072 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 471190 29 100.0 31 ............................. CGGTGCAGCGGGTTCTGGATACGGCGAAGGA 471129 29 82.8 28 ........T....GC.........AC... GGGCAGCTGACGTACGGCCTCGAGAAAG 471072 29 75.9 32 .A....TG.T.T..C..A........... GAGCAACTGGCCCTGTACCGGTGGACCGGGCG G [471058] 471010 29 93.1 32 ........T.....C.............. ATGCCGCCGACCGAGAACGGCGGGCTCACCCT 470949 29 86.2 32 ...........G..C..A..........T CCGTCGACCTGGTCACGGGCCGAGCCCCAGAC 470888 27 86.2 32 ............T.--.....T....... TGCACACGGCCGGCGTCGCCGGTGCCGGCCGC 470829 29 89.7 32 G..........G..C.............. CAGTGGTATCCCTCCGAGGAGACCCACAAGCC 470768 28 89.7 32 ..............C..A..-........ ATGCCGTCCCACCCGGCGGAGATACCGCCGAG 470708 28 82.8 32 .C...-.....G..C..A........... GACTCCGTGCAGCCGTACCAGCGAATCGCTCG 470648 29 96.6 32 .................A........... CGGCCGGGGGCGTGGTGCGGAGCGGTGTGGGG 470587 28 79.3 0 .CCA.......G..C..........-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 87.5 32 CTGCTCCCCGCACCTGCGGGGATGGTCCC # Left flank : AGACTTCCTCCTGAACACCATGGCGATCCCCGCCCACTGGTTCAACGGAAGAAACGCACTACCTCACCCCGAGGAATGGCCACCGGTCCGCGCCGCACCAGCGCTGAAGAGGACCCACACAGCTCTGTTAGACCCCGCCAGTGGCACGTGCGTCAGCGGACCTCTCGGCCTTACCCTCTGCCCCGACTCAGGGCTGTCCAAGTGACCACACCACTTGATCCGCAGCCCAGCAGCTATCGTGGCTCACCTCCCGGTCAACCGGGAAATAGGCCAAGAGTTTGTGCATTCTGGCCTTACTCCCCACACCCGTGGGGATACCTTGCCGCCCGCGCTCGCGCGGGCGGCAAAACCCTTCACCATGCCGCACATGACTTCGAAAAACGGCTAAGCCAGCCGCCCGGAGGGCGTCCGCTCACAGAAAGGCGCCCCACACAGCGAGGATGTCCGTTGTGCGAGTGACATCCAGCTACTCCCTGCACGCGGGTATCGGTGACAATCAA # Right flank : TGCAAGAGGTGTGACCGCTGGAGCCATCGTTATCTAGGGGTGTCAAGCCTCTCCGCTGGTTGATGCCCTGAGGCGCTAACAGTCACGTGAGCGGGGTGGGGGTACCCGAAGTGATCCCCGGCTCGGACGCCCCGCAGTGACGCATCCAAGGCGCCGTAGCTTCAGCAGGGTTGAGTTCCACTGTGCGCGATCTCGCGTCGACCAGGTGGAAAAAATCTCTGGTATCAGACCGCGTTTGAGATCTGCCGTGTCCCTGGGCCGGAGAGGTCTTTGAGCCTTGAGTGAGTGGCTCTGAGGGCGGGTATCCGTCGGATCTGACGGATGAACAGTGGGTGCTGGTCGAGCCGTTGCTGCCGGCGGCGAGGGTCGGGCCAAGGGGCGGACGGCGGGAGAAGCATCCTCGCCGGCGGATCGTGGACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG # Questionable array : NO Score: 3.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 481908-482059 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPB01000007.1 Streptomyces sp. CB00072 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 481908 30 96.7 31 .............................T GGAACTGGAACTGGACGAAGAGGAACTGGAA 481969 30 100.0 31 .............................. ACGCCGCGATTCCCCGGGTGTACGAGAACTG 482030 30 93.3 0 ..............C............T.. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 CTGCTCCCCGCGCGTGCGGGGATGGTCCCA # Left flank : CTCATCGAGACAGCCCGCCGCACAACACTTGGCGGTGCTCTGCCCGTCGAGCTGGAAACGCGGGACGTCACAGCGGACGTGATGCGGGACGCCGAACCGCGCCAGGGGCACGGTGCCGGCCGCGGCCGGGGCGCAGCGTGACCTACCGGCTCCACTTCCCCGGGGACGTGTTCGACACGTACAAACAGCTGCCCGAGCTTGCCCGGCGGGATCTCGCGCTCGCCCTGGTCGACGCCCAGGAAGACCCCCTCGTGAACTCCGAACCCTACGGACAGGACGACGGCGTCATCCGCACCGTCGCCCAGGGACACGTCACCGCCGTGCTCCTCCTCGGCCACGACACGAGGACCATCACCGTCCTCACCATCGCCTACGCCGGAACCACCTGACCTGCGGTCAGTGACACAGTGAAGGCTCAAGGTTGAGGAATGGTTGATTTTTTGGAATCAGTGAAAGTGCTCGCGAATCGCACCCACTCCTTGTAAAGCTGCAGGTCAAGA # Right flank : AGGTGGTGGAGATGACTACGGCTGGCTCCGGGCGGCGGCGTGGCGTGGGTGCGGTGGTCCGTTGCTGCCGTCGACGGCGACGGCAGCAACGGCGTTCTGCTCGTCCGCGTCCTACCCGCTGTTCCCCGCCGCCACCGCAGTGGCCGCCTCCGGCGGGCAGCGGCCATTATGGGCGGGGCTTGGGCGTACGCCCGCCTGTGCGAGGTGGCCGTTCTTGTCGTAGCGGGGTCGCACGACGCGGTTGTGCGGCATCAGGAGCTTGGACCCGGTGGGGTGTTCAGGCTTCGCGGGACCGGTAGCGTGCAGCTACGGCGGAGATCCACATCATCGCGGTGATCGCGCCGATCGCCAGTGTCACGGTCCCTGCAGCGCCTCCGCTCATCGCCCAGCCGTTGCCGAGCAACAGTGCGGTCGCGGCGACGCGGGAGGCGATCGCGCGTCCCCGCTCTGCGGTGCGGGAGAAATGCCGGCCGAGAACGTAGTTGGCGGCGATCAGCGAG # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIPB01000012.1 Streptomyces sp. CB00072 scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 52 30 100.0 31 .............................. AGTGGCCGGTGTCCTGGAGCGGGCTTCAGAG 113 30 100.0 31 .............................. AACAGGAATGGACCAGCCTCTGCCGGTACGC 174 30 100.0 31 .............................. TCAAGGTAGGCGACCGAGTGGAGATCACGCA 235 30 96.7 31 .............................A CACAGCTGCACGGTGGCTGCCCAGGCGTCCT 296 30 96.7 31 .............................C TCGGCTCCGTCGACCAGATCACCATCCGTAA CG [310] 359 30 96.7 31 .............................A ACGAGCGCATCCGCCTCGGCAGGGGAATTAC 420 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 7 30 98.1 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : CGCGTGCGGGGATGGTCCCACCGCCCCCACGGCCACCGGGGCGGGCCCGCGC # Right flank : CCGCGCCGGGCGGTGGGTCCTCGACGCGAAGGCCACGCTCCTCGACCTCGAAACCACGGCGGACGTCCCCACCGCTCCCTACCCCGGGCTCGTCACCCTCGGGGCGACGGAGAACGGGGACCTGCTGCTCGCCGACCTCCTGCACACCGGGGCACTGCTCCTCGACGGCACCGCCGACGACGTCCTCGCCGTCGGCAGGGCGATGGCCCTGGAAGCCGGAACGTGCGGGTGGACCGACCACACCGAGATCATGACCGTCGGGCTCGGGACCCGCCTCGCAACGCTGCTGCCCCGCGGCCGGGTCCGGCCGCTGCCCCATGTGTCCGCCGTCGCCGCCGACCTCGGAGCGCTGCTCCTGGAGGTCCACCAGCAGACCGGCGACACGGACATGCCCGAACCGCTGCCGTGGATCCTGGTCTGCGCCGGAGACGTCGACGCCGAGCAGGCCTGGCAGCTCGCCGACGCCGTCTCGGCCGCCCGGGACCTGCCCATCGCGATCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //