Array 1 12514-11264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKG01000007.1 Salmonella enterica strain BCW_1997 NODE_7_length_247233_cov_0.465262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12513 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12452 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12391 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12330 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12269 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12208 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12147 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12086 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12025 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11964 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11903 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11842 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11781 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11720 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11659 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11598 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11537 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11476 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11415 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11354 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11293 29 93.1 0 A...........T................ | A [11266] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30468-29220 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKG01000007.1 Salmonella enterica strain BCW_1997 NODE_7_length_247233_cov_0.465262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30467 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30406 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30345 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30284 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30223 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30162 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30101 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30040 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 29979 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 29918 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 29857 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 29796 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 29735 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 29674 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29613 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29552 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29491 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29430 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29369 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29308 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29247 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //