Array 1 4282-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGD01000265.1 Xanthomonas oryzae pv. oryzae strain IXO222 contig_265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4281 31 100.0 34 ............................... AATCGCCTCGTGCGCGAGCGCTACATCACGCCTA 4216 31 100.0 34 ............................... CTGAAGCGTCTATCCCGGCACGTCAGCCCGTCAA 4151 31 100.0 35 ............................... AGAGCTGTAGCACATATGGCCGATCTGCCCGAACA 4085 31 100.0 34 ............................... TGGAAGCCCTTGATGATCGCCTGCGTGTCGTCCG 4020 31 100.0 35 ............................... TTGTTGCGTATCAATGCCCCTGTTCCGTCAGCATC 3954 31 100.0 35 ............................... GAAAAGAGGGCAGCACCCATGAAGCGATGGATAAA 3888 31 100.0 35 ............................... CTCAATGACGTTATTACTCTCATCGATCCATTGCA 3822 31 100.0 33 ............................... AGGCATTGGTATCTTCCGAAATCAGCCTAGGCA 3758 31 100.0 35 ............................... GCACGTCAAAGCACGCCCGCGCAGATACAAGATTT 3692 31 100.0 36 ............................... ACTGAGCTGAGTGCAACCTGGGAAGTATCCGGGCCG 3625 31 100.0 33 ............................... TTCACTGGTGACAACATACGCAGTAACACTCCC 3561 31 100.0 35 ............................... ACTAAAGTAAACGCGAACTTTGCGGATGTGCAGGC 3495 31 100.0 34 ............................... GTGCTGGGCATGGAATGAGCAACCGTACCCGTAG 3430 31 100.0 35 ............................... GCCTTCGTTCGATGCAAATGGAATTGCAACAGTAG 3364 31 100.0 36 ............................... AGATGTTGTCAGGACTATGACATACGAGTCAGCAGT 3297 31 100.0 36 ............................... TTGAATCCTGGGGATGTGTATGCAACCTCGCCGGCA 3230 31 100.0 34 ............................... TGTACTCTTCCTTGACCCACCGGGGCGCATCCGC 3165 31 100.0 34 ............................... TGGCACTATTGCTGATGTGGTTGGGTTTTTAACT 3100 31 96.8 36 ..............................A AGGTCTGCCGTGACTGTGTAGACCTGCTCCTGCACC 3033 31 100.0 35 ............................... ACTTTTGGCTAGATTATGAGGCATGGGTATTGCAC 2967 31 100.0 35 ............................... ATCGTATGACTCTTAAAAAGGATGTGCCACCCGGC 2901 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 2834 31 100.0 34 ............................... AATATTGCACAAAGGACAACAGGTGAGACGGCAC 2769 31 100.0 35 ............................... GTGCCTAGGGTCTTCCCAGCGACGCTCGGCACATC 2703 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 2637 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 2570 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 2505 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 2440 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 2374 31 100.0 34 ............................... AATGCCCTTGCTTCAGATAGACAAAGCGATGCCG 2309 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 2244 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 2178 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 2113 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 2050 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 1986 31 100.0 33 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCAC 1922 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 1858 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 1792 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 1727 31 100.0 34 ............................... GAGTTGTTACGCGCCTGGCGCCCCTTGGACAGGC 1662 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1596 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1531 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1466 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 1400 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1333 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1267 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1198 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1132 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1068 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1002 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 938 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 873 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 808 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 742 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 674 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 608 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 542 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 476 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 411 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 345 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 279 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 214 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 149 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 83 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 65 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //