Array 1 134223-134841 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMXM01000006.1 Chloracidobacterium thermophilum strain OC1 Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 134223 37 100.0 36 ..................................... CACTCCCCGAAGTTCATAGCGGCAGCCCATCGAGTC 134296 37 100.0 38 ..................................... GCGCCAGACGGGATCGGCGGCCAGGGTCTCGACCAGAT 134371 37 100.0 35 ..................................... GATTACTTCCTGAACATGATGCGGTGATTTTTGAC 134443 37 100.0 36 ..................................... ATGGTACGGCATGGCCAGCACGGTGAGGGCGAACTG 134516 37 100.0 37 ..................................... GCCATTCGCTGTTCGCACTTTACCTGATCCACTGGGG 134590 37 100.0 36 ..................................... TCATCAGCTTAGCAATGCTTGTCCATCCTATACGCC 134663 37 100.0 35 ..................................... TATTCAAGGAAGATAGCACAATAAGCGCTAACGCA 134735 37 97.3 33 C.................................... AGGACCTTCGTTGAGGTCGAGCAACCCGAAAGC 134805 37 97.3 0 C.................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.4 36 GGGTGCCGACGTCGGCACCAACCTGATCGACGGACAC # Left flank : TGCTCAAAGATATCGACCGCGCGCGGTTACAGACCGATCGCGAGGAGCAAATGAATCAGAAGGAAGATCAGGCGATGATTCTTGACCTCGGCCCTAACGAAAAGGAGGCCCGTGAAGCGGCCACGGTCATCGGCCAACCCCTGCCTGAGCAGGACAGCGGCATCGTGGTGGTTTGACTTTATGACCGTCGAAATGTATATTTGAAGCGCCTCTACAGGAGGCGAGAATGCCACGGCACGTGTCTTCCCCTTCAATGGGCTTGGCACCGTGGAGTCGATCAGTTTTGTTCCGACGAGGGAGCGGACTCCTCAATAGCCTCCGCGAGCGCGGAGGTGGTGAAGGGGGGTTCAGGGGATGCTCGAACCCCTTGAGATTCCTTGAAATGAAGGGAATTGGAGCCACTTGAAAGTGCCCGTCGCAAGGTGCAAATCTACCAACGTCTGGTCATGCTCGCACAGCGGTTCGAAAACGCAGTGCCAGCAATGGGTTGGAAGGGCGGC # Right flank : CCACTGTTGAATTCGCGACAGGTTTGTGACACAACTTGCGACAAACTCACGACTCGACTTGCGACACTCCCCTTTGGTAGGGTAAATGAGGAAATGGAATTGCCAGGGCTTCCGGCCCGCCGGGGGCCGCATGCTCTTTGATAGCTCATTGAATCACAACGGTTTTCGGTTAACAGCCGGAGAACGAGAACGGTTATGAAGAGGGTTGCAAACGGGGAGCCACTTTTCAGACCGCTGGCGGTTCGTACGCCGTGCAAGACCCCCTTGGGAGCGCCCAACGGGGTCTTGCTGTTTTGGGTGTGTCCACGCCGCCTATACCCACCTGCCCCTTGCCCTGCGCTTTCGGCTGCCGTTTTTCGCTTTTCCTGCTTTTCCCGATGTCAGAACAGAAAACTGTGGAATTGGTCAAGTATCCCAAGGTTCGCAGTTATTGACTTGAACATGAATCTATTTGCCGACACGACGAATGCGCAATGCTCCTGGCGTGATGACCGCAAACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTGCCGACGTCGGCACCAACCTGATCGACGGACAC # Alternate repeat : CGGTGCCGACGTCGGCACCAACCTGATCGACGGACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 129880-124480 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMXM01000001.1 Chloracidobacterium thermophilum strain OC1 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 129879 36 100.0 37 .................................... CGGCTGCCGGACGCGAAACCACTTACACGCTGGACAC 129806 36 100.0 34 .................................... GACGTCCCCGGTGGGCGGTCCGTGGCGGTAGTCC 129736 36 100.0 36 .................................... GGCGTCACCGAAAAGGTGACATATCCCTAATCACGG 129664 36 100.0 34 .................................... AGCTTCAGCTTCGTAGGTATAAGCCTCAGGCGGC 129594 36 100.0 35 .................................... TGATCTCCATCACGGCGCTTTTCGTCTCTTCGTCC 129523 36 100.0 37 .................................... GACAGACTTCTTGGCAATGGATTCGGTCGCGTGAGTC 129450 36 100.0 36 .................................... CAAGCAAGCAAAACAGGGCATTGCGCCCCTTCTGAC 129378 36 100.0 35 .................................... TTCCTCAGGATTGCGCGACACCTTTTCGGTAAGGT 129307 36 100.0 35 .................................... GGTTCCTTCCGGTCGGCATCACAGGGAAGCGCTGG 129236 36 100.0 36 .................................... GTCCCAGTAGCTCTCCGCCTTCGGAAGACGCCTAGA 129164 36 100.0 36 .................................... ACTCCCATTGCCTTGACTCCCACCCAAGCGCCACGT 129092 36 100.0 37 .................................... GTAGGTAAGTTTCGCTTCAGGCTTCATTTCAATCTGT 129019 36 100.0 39 .................................... CCTTGCGCGAATTGTTGGGTGAAGAGCAAGGCTGTGGGT 128944 36 100.0 36 .................................... CCCGGAACCGCCTCACCGGTGGACTGTTTTTTCATG 128872 36 100.0 35 .................................... TTTTGCGTAGCAACAAGGACGCCGCCAATCCCGCG 128801 36 100.0 35 .................................... CTCGTCATTCTCGCAAGGCGTCCTTCCTACGTCTT 128730 36 100.0 38 .................................... CAAGGCTTTGGCTTTGAGCTAACCGGCGGAGTTAGGGT 128656 36 100.0 35 .................................... GAAAACGTGGCGCTTGGGTGGGAGTCAAGGCAATG 128585 36 100.0 37 .................................... ATTCTCTACTCTATAGGGAGTGCAACCTATGCAGGAC 128512 36 100.0 38 .................................... GTCCTCCCAAAGTGGATTAGTTGCCTTTTTCGGCAACG 128438 36 100.0 36 .................................... GGAGCATCCGTCCTTCTGCGGTCACGTCATCGAGCT 128366 36 100.0 38 .................................... ACCTACAGACAACCTACAGGTTTCTGCACGGTATCAAC 128292 36 100.0 36 .................................... TGATTACGCTCCTAATCCGCTTTTCTCTCCGGCCGT 128220 36 100.0 38 .................................... GGGTGGGATTTTCGGTCAGCTTGGCGGAAGAACTAGGA 128146 36 100.0 34 .................................... TCACGAAGGTTACCCTGTAGCTCTTTCCATGTTT 128076 36 100.0 37 .................................... TGCATTCCTTGCCCAAGTCTGTCAAGCTTCCCGTAAG 128003 36 100.0 35 .................................... CTGAAAATCAACGACTTACCGGCGGCAATCCACGT 127932 36 100.0 36 .................................... GGCGTTTGAGCCGAACGCCATGATGAGACCGAACAG 127860 36 100.0 37 .................................... TGCGCCTTTCGCCCAGGTCTGTCAAGCTTCCCGTAAG 127787 36 100.0 38 .................................... ACCATCCTGAAGTGAATTAGTTGCCCTTTTCCGGCAAC 127713 36 100.0 38 .................................... ACCTACAGACAACCTGCAGGTTTCTGCACGGTATCAAC 127639 36 100.0 36 .................................... TATCGTGACCTTCACTTGCCTCCATTAATTGGAGGG 127567 36 100.0 36 .................................... CGCAAGGCGTCCACTCTTCGGACGCTACGAAGATGA 127495 36 100.0 36 .................................... CCGCGAAGAGCTTGAAGGTGTGACCAACTCTCACCT 127423 36 100.0 36 .................................... GTAGCTGTATGCTTCAGGCGGCACGTCAGACAAGGA 127351 36 100.0 39 .................................... CTGAAAATCAACGACTTACCGGCGGCAATCCACGTATAT 127276 36 100.0 37 .................................... GTCTTGGTTGATAACGGTTTTACAGCTACGACATCGC 127203 36 100.0 37 .................................... CGGTTCCGGTTTCGGAACCGGTTTCTTGATGACCTTC 127130 36 100.0 38 .................................... TTGATGACCTTCGACATAGGTCATTACCTCCGAATCGG 127056 36 100.0 37 .................................... ATGGTTTCTCAACCTCCAGAGAGAAATATGTCGCCTT 126983 36 100.0 35 .................................... CGCCGGAACCGGTTTCTTGATGACCTTCATAGGTC 126912 36 100.0 36 .................................... GCCGTGCGTTGTCGGTTGCTTGTCACACACACCAGA 126840 36 100.0 38 .................................... CCTGTGGCGTCTTGCGTACGACCAACCGGTTCTTTGGT 126766 36 100.0 38 .................................... TAGAAAGTCCTGTTAATCCAGTGATAACCGCACAAGTA 126692 36 100.0 37 .................................... AATAACTTACGAAAAGTCTTGACAGATTCACCAAACC 126619 36 100.0 36 .................................... GACCGGATGAAGTCAGTCTTCATCCGGTACGGCAGC 126547 36 100.0 34 .................................... CCAAAAAACGTTGACGGGTCATCCGACACTGGAG 126477 36 100.0 35 .................................... TTGGCGTGCAAAAGATGATGATGACGGCGGGCAAT 126406 36 100.0 39 .................................... ACGACGGCCGTTATATCGTGACCTTCACTGGCTCCGATC 126331 36 100.0 35 .................................... GCCGGTTCCGGCGCCGGAACCGGCTTTTTGATGAC 126260 36 100.0 38 .................................... TCAGTCAGGAGGTGTGGCCATGGCCACATTCGAGACTT 126186 36 100.0 37 .................................... ATTTCTGGGGAAGAAGCGTGTCAGTCTTACGCTTTGG 126113 36 100.0 35 .................................... TCGACCTGCTGTCCTTCAACCCACAGCTTCAGATC 126042 36 100.0 36 .................................... TACCTGGTTCCGGCAAAACAATACGATTCCACATCC 125970 36 100.0 37 .................................... ATACTGGTACCTCCAAGTGAATTAGTCGTCCTTCCTT 125897 36 100.0 36 .................................... GAGTTGATCCGGCAAGCAACCGCGCCAGTCCGGCAC 125825 36 100.0 41 .................................... GCCTCCCAACTCTCCAAACTCAAAGACACCGAAACCATCAC 125748 36 100.0 41 .................................... GCCTCCCAACTCTCCAAACTCAAAGACACCGAAACCATCAC 125671 36 100.0 35 .................................... GGGTAAGGCACCGAGTCTGGTATCTTCCGAAGCGT 125600 36 100.0 35 .................................... GACGACGCCAACATTGTGCACCATCTGTCCGGGTT 125529 36 100.0 38 .................................... TAAACAAGTCAAAATAGAGTATTTCTCCTGAGGCCATG 125455 36 100.0 39 .................................... GTCGCGCCCGGTGAGTCATGCCGGGCAGAGGCTACGGAT 125380 36 100.0 39 .................................... GTCGCGCCCGGTGAGTCATGCCGGGCAGAGGCTACGGAT 125305 36 100.0 35 .................................... CGCCGATCAGTTGGAGGGCCAGTTCGGTTGGCATT 125234 36 100.0 35 .................................... ATATCCAACGGCGACAGAAACCGCGACTCCAGGAC 125163 36 100.0 40 .................................... GAGAGCGAGCTCTGTGGGCATGGCCACAACCCAGCCGCCG 125087 36 100.0 39 .................................... TACCAACGCCACAGTTTGGCGTTTGCGCAAGGCGTCCAC 125012 36 100.0 38 .................................... ATGATGCCGTCACTCGGTTTGCCCGGCTCCTGCCAGGC 124938 36 100.0 35 .................................... CTCTACCTGGCCAAAATGCGCAGTTGGCCGTTTTT 124867 36 100.0 35 .................................... CCGGCATTGGGTGTCTGGCGGCGCGCAAAGGCCGC 124796 36 100.0 36 .................................... CGAGTGATAATTGATGGGGATTTCACTGGCTCGATC 124724 36 100.0 36 .................................... CCCTCAGGAACCCGCACGCGCGTCACCGCGGCGTAC 124652 36 97.2 36 ...................................T CGGGTGCCTCCCCAAAAAGATCGGTTCCAGCAGGGC 124580 36 100.0 30 .................................... AGCAGAAAATCGAGTGGTGAATGGCGAGTA 124514 35 77.8 0 ......T..C.........-..A..C.TG.....A. | ========== ====== ====== ====== ==================================== ========================================= ================== 75 36 99.7 37 GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC # Left flank : CGGTACATTGTTTGCTATGACATTGCCAATCCGAAGCGGTGGCGTCAGGTCTATCGGATTATGCGTGGATTTGGCGATCCCTTGCAGTATTCGGTTTTTCGGTGTGATTTGTCGGCGACGGAGCGTGTCCTGTTGTTGATGGCGGTGACCGAAGTAATCAACCAGCGTGAGGATCGGATTATGCTGGTGGATGTTGGTCCGGTGGACGGGCGTGGCCGGACTTGCATCGAGGCGCTTGGGAAGCCTTTGGAAGTGGCGCCGACGGAGCGCATCACGGTTGTTGTATAGCGTTCATTGGCTTAGAGTGGTGACGTGTGGGGTCTGTGCGAGAGGCGGGGTGGTGCCGTGTGGTGCGGGAGCCGCTCGCAGGACTTAGGGGCTTATGTGGCTTGAGTTTACAAAAACAGGGTTGACGCGATCCGGGTTTCGTGGGTACAAACTCTCCGCCGCTCGCAAGATACCCTGCAGGTCTTTGAAAGCAAGGGACTTGTGAGAGTGCG # Right flank : CTTTGCACGGTCTCAGTAAACCGAAGCAAGGGTGTTTGAGAACTTCCAGCCCTTACCAGTGCGGGGACTGGCCGATAATCTCAATGCCGGTCAGATACCCCTGTGCGTCACGGGCTATCGTCCGTACAATGGCTTCCCCCTGCCAGCCATAATCCGGCACCGAAATGGTGAGCGGTGAAGGAATCGCCATCGGCTGCGCCAGCCGAACACAGGCCCCCGACCGGCTAACATCTACCGTCTCCGTTTCCTGCTCAAAAGACCGGCCGCTGAGATCCGTTCCAGCCACAACCACCCGAACCGTAAGCTTCCGGCGCGGCTCACGCCGAACGGTCGCCCACCCCTGACGGGGCCGCAAAAGCGTCTCATGTTCCACAAACACCGGGTTTTTTGCCGTGCTGTGAAAAAACGTGTGGCCTCCATCGCCATCGCCCTGCCTGTCCACCTCACCTTTCGCTGAAACGAGTTCCTCACCCCACAAAAGGCGATACACGTTGACCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCGCTTTGAAAAAAAGCGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 656053-660161 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMXM01000001.1 Chloracidobacterium thermophilum strain OC1 Contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 656053 36 100.0 35 .................................... CAGTTTTCCGCGTCACCAGCGTACGACTAGGCTCT 656124 36 100.0 36 .................................... TCGAGCAACTTCTCAGCGGTAACGATTACGCCGGAA 656196 36 100.0 36 .................................... TGCAAAAGCAGCCGATGCCCCTTCTTGATCGCGTTC 656268 36 100.0 35 .................................... ATACTGCTGCCACGCTGCAAGGCGCATTCTCAGTC 656339 36 100.0 35 .................................... TCAAGGCTTACCGCTGAGCAATGGGCAAGTGTTAA 656410 36 100.0 34 .................................... TTTTTGTACCAGCTTTTGTCGCTGGGCAGCCCGA 656480 36 100.0 34 .................................... TTGGACGAGGAAGCGCAAGCGCAAGCGCGGATTA 656550 36 100.0 35 .................................... ACGCGCTGTCGGCAACACCTGTGGCGGCGGCGCAG 656621 36 100.0 36 .................................... TGCAAAAGCAGCCGATGCCCCTTCTTGATCGCGTTC 656693 36 100.0 34 .................................... AAGGCCCGTATCAAGGCTTTGCATCTAGCACACG 656763 36 100.0 34 .................................... AGGAACGTAACGGCAAATTCGTTCTGCCCGTACA 656833 36 100.0 37 .................................... AACTCCGCGAGATATTCCTGGCGGAAGACATTTTCGG 656906 36 100.0 34 .................................... AAGCCTAATTTATCCGCTAGCACTTCGTAGGACA 656976 36 100.0 36 .................................... ATGGTGGCGGCGGTGGCGGCGGTGGAGGCGGCGGAG 657048 36 100.0 38 .................................... ACGAACCTGGAATACGGCACCTCCGAGCCGACGGTGAT 657122 36 100.0 36 .................................... CTCTCGACCCCGACGGTTATTGATTACACACGCAAT 657194 36 100.0 34 .................................... TACTTTGGGGTTTCGGTTTCGGTCACGTCGAAGA 657264 36 100.0 34 .................................... CCCAGCGGGACGCTTGAGCGCGATTCTTGCTGGA 657334 36 100.0 40 .................................... CCAGCCTTCCTGCAACGGCAGGACAGCGGAACCGGCAAGT 657410 36 100.0 37 .................................... GCAAACTTAGATGCGGCGCTCGTCGGCGCGACAGCGA 657483 36 100.0 39 .................................... GCACGTCTGCGACGCGATCGTGGAGTCACCTACCGCAAT 657558 36 100.0 36 .................................... AAGAGGTAGGCAACCTGACACTCCAGCAGGCGCAAC 657630 36 100.0 34 .................................... CGCAAATTGACGCGATCGCAGAAAGCATTCGCCA 657700 36 100.0 36 .................................... TTTACGCTACGGGGAGCGGTACTGCGGGACACGAAT 657772 36 100.0 35 .................................... TTTTCGGTGTCCGTAATTCCGGTCGGAATCGGTTG 657843 36 100.0 36 .................................... TCGGCGTCCCTCAACCGCAGATCGACTCTACGTCCG 657915 36 100.0 37 .................................... CTACGCACTCGCTCTCCGAAGCCGTGGTGGTTGGATA 657988 36 100.0 39 .................................... GCGCGGATTTCCTGTGGCAACTGAAAGCCCGGCATGCCG 658063 36 100.0 35 .................................... GTTAGCCAGAACATGGGATTTGGAGGGACTGGAGC 658134 36 100.0 37 .................................... TAGGTAGTCCCCCATCTTCAGTCACCTCCAAAGGGAA 658207 36 100.0 34 .................................... CGCGTCGTTATTCGGGAGACGGCGATTGAGCCGG 658277 36 100.0 34 .................................... AATGCGATTACGAGACTCCGGCGTGCGCGTCAAA 658347 36 100.0 35 .................................... AACCGGCTCCGCTCTCTGGCAACGGCGCTGTCTTG 658418 36 100.0 36 .................................... ATCAGGATCGAACAGTGCTCGTTACTCCCTCTCCAA 658490 36 100.0 35 .................................... CTGTCGGGTTTGACGTTCGACAGACATCTTGGCAA 658561 36 100.0 36 .................................... AACTTCCACCCTTCGCCGCCGCGCCAAACTGCAAAC 658633 36 100.0 37 .................................... CCCGTTTCAGGGTCGAAGACTTCCACCAGTTTCAAGA 658706 36 100.0 34 .................................... CCGGTAGAGCTGATAACGCCAGTCGAAGGGTTGA 658776 36 100.0 36 .................................... TTCGACGTCCCGCCGGCGGAAAAATTGACGCGGCGA 658848 36 100.0 38 .................................... CTTCCTGAAGCGATTGAGAACTTGTCTTCGACGGCCTC 658922 36 100.0 34 .................................... CTTTCGTCCCCCACCATCGTTGACTACACCAGAA 658992 36 100.0 35 .................................... TCGTTGATGACGCTGGACTTGGCGGCGGGCTAACC 659063 36 100.0 36 .................................... AGCCAATCGGCGGCATCACGTCAATAGGCATCCACT 659135 36 100.0 35 .................................... TCCGCGGACGTGGCTACCGCTAACCGCATCGGCTC 659206 36 100.0 36 .................................... TTTTGCAAGACACGAAAGACATTCACCACGTCTTCG 659278 36 100.0 34 .................................... TCCAGCGCTTTTCAGGAAGGGCTAGGCAGCGGGA 659348 36 100.0 35 .................................... ACGCGCTATCGGCGACACCTGCGGCAGCGGCGCAG 659419 36 100.0 36 .................................... ACGTGCGAGAATGCCACGGGCGGAATACCTCCACGA 659491 36 100.0 34 .................................... TCGTTGATGACGCTGGACTTGGCGGCGGGCTAAC 659561 36 100.0 35 .................................... AGTTTACTTCCGTCGTTGACCGTACGGTAGCGAAA 659632 36 100.0 34 .................................... TCTGCTTAGCCTTCGTCTGTCCGGTCGGCATCGA 659702 36 100.0 34 .................................... AACGCCGGATTGAATCGGTACGTTGTTGCTAACA 659772 36 100.0 36 .................................... ACGCATCCGATAGCGCGCAAGTCTTCCAGAACCAAG 659844 36 100.0 35 .................................... TCAATGAAACCCGTAAGAGCTTGGACTTCTACGCG 659915 36 100.0 35 .................................... GCGGCGGCGGGGGAGTGATCGCGTTCGGAAAGCGC 659986 36 100.0 34 .................................... ACGGCGATACTTCCTTTTCCTCATCCCGTAATAA 660056 36 100.0 34 .................................... TCAGCGTTCCGGTAACGCCGTCGGCTAAATGCGT 660126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 58 36 100.0 35 GTGCAGAAATCTTTGATGCCGAAAGGCGTTGATCAC # Left flank : ACGCGATCCGAAGCGATGGCGTAAGGTCTATGAGCGCGTCAAAGGGAATGCGGAAAGGGTACAGTTTTCTGTCTTCCGCATGTATTGCACCAAAACCGACCTTGAGCAGTTGCGTTTTGATCTGGCAAAGCTGATGACGAGTGAAGATGATTTGCTGGTTATCCACTTGTGTCCCGGTTGTGCAAAGCGTGTGGTTGACACATCAACCACAACTTCCTGGGATGAAGAACGCAAGCGGGTTGAAATCCTGTAGGGGGTGTGCATTCACGCATGTCGGCGTGGACAGGGTACTTTGCTTCTGAGTGTTTGGCAGGTTACTACAAACAAAGGACTTCTCTGTACGGGAGCAGAAGAGACTTGCTTGAATGGCAATACACCTTTTATTTTGTGGAAGTTACAGACACTGATCGGCGTGCGCAGGATAACTTGCTGTTATTCTGGAAGAGGTGCTTGAATGATAGGAAATTTTATGTGGCCAGTGCTTGTCGCTTGGGGGCGCT # Right flank : CCTTCGTTTTTTCTTTTTCAGCGCGCCCGACCTGACGGCAATTGTCCATGAACAATTGCACAGGGGAAATGCAGGCAGCCGAACTTTTTTCCGGGGAGTCTTGGACTGGCTCGTGTTTGGCAGACCTCTGACGTTGCAGGACTGACGTCCTTGAACAGAGCCACAGATAGTGCTTGTTCATGAATCGCTCGCAGGCACTTCCTTATGTTTCATCCTCTCCTGTCTTCTTTCACCTTCTTCCATCTTCCTCTCCCTTGGCCGAATGTTTTTTGATTTTATTCTCATATGATGTTTTTCTCTCTTCTTTTGCCCCTGTTTCCTTCTGCCCTTCTGTCCACCTGTTTGAGAGGGGCTTTTATACTCTTTGCCGATAACATGGTTATCAGTAAAAGCTACCCTCTTGCCGATAACTGCTTTTAGGCTTTGCTCAGGTTTTATACGCTATGCCGATAACCTATGCTTCCCCTTTTCTTTCGCCCCTTGATAATGTGCAGGAGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAGAAATCTTTGATGCCGAAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //