Array 1 242032-243162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXJ010000001.1 Listeria marthii strain FSL L7-0350 NODE_1_length_1410059_cov_71.408169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 242032 29 100.0 35 ............................. GGATGTTCTTTGATGAAGTAGCGCTTATGCCTAAA 242096 29 100.0 36 ............................. TTTTTCCCCAGTCAATTTTCTTTTTCTCTTCGCTCA 242161 29 100.0 34 ............................. TAAGACTAATGAGCTTTTTACTGAGTAGTTCTTC 242224 29 100.0 36 ............................. TGGACATAGATGCACTAACCATGGCGGTCGCAGCTA 242289 29 100.0 34 ............................. TCGATGCGGCCGGAGCTACCGCGGAAGGAACGAC 242352 29 100.0 35 ............................. GTGAAAATTAAAAGCAAGGACGCTTTACGTATTCC 242416 29 100.0 37 ............................. ATACCTTAGACTTAAAAGAGATTTATAAAGAGAATAA 242482 29 100.0 38 ............................. TTAGATATGGACAAAAAACATGTTATTGAGCTTACCAC 242549 29 100.0 35 ............................. CTATATAACTCCACGTTAGAGCTGGGGCCAGTTTG 242613 29 96.6 36 ..............T.............. CTTTTTACATTAGTTTTTTGATCACTAGCAAACAAC 242678 29 96.6 34 ..............T.............. CTTGGGATAAAGAAATCATCATAGCTCCCCCACG 242741 29 93.1 38 ..............T..........G... TTCTCAGACGAACCAAAACCTTCGGAGTGCGAAGTTGT 242808 29 100.0 37 ............................. GAAACCGCAGGACAGGCCCAGTTTGCGCGATTTGTGT 242874 29 93.1 35 .......T......T.............. AGAAGTTCTTGAATGTAACGTAAATCACAACCATT 242938 29 86.2 36 .......T......T.A.A.......... TACGATGACATCGCAACTTACGAGGGCACATTGACA 243003 29 96.6 39 ......A...................... AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 243071 29 89.7 33 ............C.T.A............ CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 243133 29 82.8 0 AC.....T........A......A..... | A [243154] ========== ====== ====== ====== ============================= ======================================= ================== 18 29 96.4 36 GTTTTAGATACTTAATGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGATAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTCTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGTTGGGAGTGGTTGGGATTAGGGGAGTTTGGTGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAATCCAAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCACGTTAACAATTCCGCAACAAAGACACCAAAACCCCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGTGAAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGAAAGAACTAGCAAATAATAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGTAACACAATTAGCGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACTTAGAAAAAGGCGATAAAATAGACATTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 258110-259889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXJ010000001.1 Listeria marthii strain FSL L7-0350 NODE_1_length_1410059_cov_71.408169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 258110 29 100.0 36 ............................. GGATTTCATTTTATCGGTTGCTGCAACAAACGTTAT 258175 29 100.0 37 ............................. TTGTCAAAAATGATAAAAAGGTGAATAGTTGGTGGAT 258241 29 96.6 37 .........................G... AGGCATTCTTGCAGATGACTATTCTTACACACATCAC 258307 29 100.0 35 ............................. ACAGTGGATTCTTTCGCGGACCAGTGAATTTTATC 258371 29 100.0 36 ............................. TAATTAATTTTCTATTTTCGTTTTGACTCTCAATAA 258436 29 100.0 36 ............................. ATCGAGATCGAGGCATAAAAAAATGGCAAGGATTTT 258501 29 100.0 39 ............................. GGTTGTTCAGGAGGAGATTTATGTTTACATCTGTTTGGC 258569 29 100.0 35 ............................. CGGCATTTCTAGCGCCCAAATCAGCACATTTGCGC 258633 29 100.0 35 ............................. TTAAAATAAATGAACATAACAGCAACCTCGAATTT 258697 29 100.0 34 ............................. AATGGGGACACGGGCACCTAACTGAGGAGATTGA 258760 29 100.0 36 ............................. TTCGCAATAGAGTTCAGACATCAAGTTATCATTATT 258825 29 100.0 37 ............................. ATCTTAGAAATACTAACATTGGTAGTGAAAGGGTTAG 258891 29 100.0 35 ............................. ATTAAATGCGCTCTATTATATAGCCATCCTGTTTC 258955 29 100.0 37 ............................. TATGGCGATGGCGCAGGTAATGATGTTTCAGACATTA 259021 29 100.0 34 ............................. TCACTAAAACATTGTACGCAATTTGTATTTTCTC 259084 29 100.0 36 ............................. TTACTACGTCCATTCCAACAAGCGGAAGGTGGAATT 259149 29 100.0 37 ............................. TGATTAACAATGTTATTTTCACCAGTTTTTAGTGCCA 259215 29 100.0 35 ............................. TTGGGATATTGCGATGCAAAAGTATCAATAGATGG 259279 29 100.0 36 ............................. GAATTTAAAACAATATTGTCAATTCGTGTATTCGTT 259344 29 100.0 36 ............................. AATCGCCTAAGCCCGCAGTAAAGAGCTAATTTAATC 259409 29 100.0 36 ............................. AATGCCTTCGCTAAACGCAAAAGGCGAAAGGCTAGT 259474 29 100.0 35 ............................. GATTACATTAATGGTTATTAAAGAATTGCCTCACC 259538 29 100.0 35 ............................. TACCACCTAAATAACTTATTTTCGTTCGCGCTCCA 259602 29 100.0 36 ............................. ATAATTAATTCGATGATTTCTTATATAATTTTTAAC 259667 29 100.0 34 ............................. ACCATGTTTGACGCAATGACAGGCATGGAATACA 259730 29 100.0 34 ............................. GTTTCCATATCCTTTTTAAGAATTTTCACTTTAG 259793 29 100.0 38 ............................. ATGATATATCGCAGGATAGCGTCATTAGCATTCAATCC 259860 29 86.2 0 ...............C......CA....C | C [259882] ========== ====== ====== ====== ============================= ======================================= ================== 28 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCTGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAACCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAGTCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //