Array 1 466033-465333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIH010000004.1 Pseudomonas aeruginosa strain PA233 NODE_4_length_484793_cov_24.841821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 466032 29 100.0 32 ............................. TGTCCGGGGACTCGAACAAGATCGATGCGGCG 465971 29 100.0 32 ............................. ATGCCGATGCGGCCGAGGCCAAGGCCCGGGCG 465910 29 100.0 32 ............................. TCGTGGAGTGGACGGCGCCGCGTCGGCACCAA 465849 29 100.0 32 ............................. AAATCCTTGCCACCGAAGAAACCCAGAAGGCC 465788 29 100.0 32 ............................. GGCGAGAGGGTGACGACGGCAGAGACGAGCGC 465727 29 100.0 32 ............................. CACGGCGTCACCGGGGCGCTTCCGCCGCTTCC 465666 29 100.0 32 ............................. GCGGTAGCGAACACCGCCGACGCTTACCAGGC 465605 29 100.0 32 ............................. GCGCGGTACTGCACCGGCACCAGGGTAGACGC 465544 29 100.0 32 ............................. CATGTTGGGTTGGAGGGGGGAAACAACCAGGT 465483 29 100.0 32 ............................. GATGCGGAGCTGGAGCAGTACCCCGAAGGCAA 465422 29 100.0 32 ............................. AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 465361 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTGCTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 476334-475207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIH010000004.1 Pseudomonas aeruginosa strain PA233 NODE_4_length_484793_cov_24.841821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476333 29 100.0 32 ............................. CCCTGGTCACCGCGTCGCTCCGCTTCGACCCG 476272 29 100.0 32 ............................. CTCTCTAAACGCCTCTCCATTGTTTCTCAGGA 476211 29 100.0 32 ............................. TCGATATCCAGACGTTCGCGCAGTGCTGCTGC 476150 29 100.0 32 ............................. CATCAACAGTTTCTAAAGCGGTCTTAGCCTGA 476089 29 100.0 32 ............................. CCGACCAGGTTGCGTTGCCACAGCGAAACCAG 476028 29 100.0 32 ............................. TCTTCGGACTCCTCGGGCCGCTGCTCGAGCAC 475967 29 100.0 32 ............................. TGAAAAAATGGAAGAACTTCCGGCATCTTAAA 475906 29 100.0 32 ............................. GTCGATGGCTTCGCGCATTGCAGCCTTGTCGC 475845 29 100.0 32 ............................. TGTCTTGGTGACACGAGATTGCAGTGTCGCTA 475784 29 100.0 32 ............................. CCATGGACAACGACAAGCACCCCAACCTCGGC 475723 29 100.0 32 ............................. AGGCGCTGGTGGGCAAGGTCAGCGAGTGGGTA 475662 29 100.0 32 ............................. CTCAAGGAAATCATTTCACTGTCCGACAAGGG 475601 29 100.0 32 ............................. CTACGAGTTCAAGAGCAATGCGCCTGGGATCG 475540 29 100.0 32 ............................. TCAACAACGGTGATGTCGGCTTCGGGCCAGGG 475479 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 475418 29 100.0 32 ............................. GTTGTAGTAGTCCAGGGCGGTATCGCCGTAGC 475357 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 475296 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 475235 28 79.3 0 A..........A..C.....-..A....T | C [475226] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGTCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //