Array 1 25958-24668 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_APSQ01000114.1 Neisseria meningitidis 61106 gnm61106.contig.113, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     25957	    36	  94.4	    30	........G...A.......................	TTTTTGTATCCATTCCCAGCCGGAAATTAA	
     25891	    36	 100.0	    30	....................................	CTTTAACTTTGACCGTGTGCAATCCAGTTA	
     25825	    36	 100.0	    30	....................................	CTGACCACACCTATCCGCCAGTGCTTATGC	
     25759	    36	 100.0	    30	....................................	AAGCCGGTTTATGGCAATTCTGCCGCGTCC	
     25693	    36	 100.0	    30	....................................	ATGCCTTTTTTTGTACTGTTGTTTGAACGA	
     25627	    36	 100.0	    30	....................................	AAATTCGTTTCAGATAGCAAACGCAGTAGT	
     25561	    36	 100.0	    30	....................................	GCCGGATATGACGGTGGGCAACTGGTACAG	
     25495	    36	 100.0	    30	....................................	ATTTCGCTTTTGTATTGATTCAAGGTGCTT	
     25429	    36	 100.0	    30	....................................	AGTATTCGTCGATGATGGAAACTCGAGCAT	
     25363	    36	 100.0	    30	....................................	GGGTAGCCAGTGCTAAAACCGCACCCGCTT	
     25297	    36	 100.0	    30	....................................	ATGATGCAGGCTGCTCCGTCATCGTCTGCA	
     25231	    36	 100.0	    30	....................................	CCAAATAGAAATACATACGCCGAGTAATTA	
     25165	    36	 100.0	    30	....................................	TTTCTTTTTGTAATTGTTCTGCCTTTTTTA	
     25099	    36	 100.0	    30	....................................	CAATAACGGCGAGTTTACGCATCAATGCGG	
     25033	    36	 100.0	    30	....................................	TGTTATCCCCGGAGTACCTTTTATCCGTTG	
     24967	    36	 100.0	    30	....................................	CCGGTTTGCCGGCTTTTGCGTGTTCGGTTT	
     24901	    36	 100.0	    30	....................................	TTGCGCATGATGGCAACGATAATTACCATC	
     24835	    36	 100.0	    30	....................................	TACCCACGGCGGAAACCATTGCCACAAAAC	
     24769	    36	 100.0	    30	....................................	TCATACCCAAATCATCGGCATCCTGTTGGT	
     24703	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	  99.7	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : NA
//