Array 1 107988-106181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTU01000005.1 Prevotella sp. R5003 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 107987 32 100.0 33 ................................ ACGTTGGTAATTTCGTTGACGATACCGTTGGAT 107922 32 100.0 34 ................................ CGTGATACCTATCATATCAATGTCGACGCAGCTC 107856 32 100.0 35 ................................ CCTTAATTTAACGTTATGAAACAGATTGATTATAA 107789 32 100.0 35 ................................ TACAGTTGCTAATTCTATATTCGCAGGTCTGCAGA 107722 32 100.0 34 ................................ TTGCAAACAATCATCTCGCAACCGTACATCCTCC 107656 32 100.0 33 ................................ CTCAGTCTTTAAGATAGATTCTATTGAGCGAGT 107591 32 100.0 33 ................................ CGTGACTTTGTCTATGATTGCTGGTCGTTGCGA 107526 32 100.0 33 ................................ TCATTCCGCAATGTCGACTTTACCAATTTTACA 107461 32 100.0 33 ................................ ATAGTTCAGATGAACGACTATCGTTCATCGCTA 107396 32 100.0 35 ................................ TCAATTCTATCGGTCAGCCAAGTGTTGGTACTTAT 107329 32 100.0 33 ................................ CGACTATTTTAACCCGCTCTATCAGCGACTCGG 107264 32 100.0 33 ................................ TCAATCTCACTCTGGTTATCGTTCTACCCCCCT 107199 32 100.0 35 ................................ TTTACCTGATTATGCTGTAAACCTTTTTCGGCTTG 107132 32 100.0 34 ................................ AGACTCGAGAAGAAATCAAGAACGTTGCTGAAGA 107066 32 100.0 35 ................................ TAATCTTCCTTACATACTTACGCTCCGTCCGTGGC 106999 32 100.0 35 ................................ AGATTCCAAAGGCGCATTTGTTTCTTCTGCCTTTC 106932 32 100.0 33 ................................ GTACTAAACGAGATGATTTTAGCGTTCGTGTAT 106867 32 100.0 33 ................................ TGCAGTCTTGTGGAAAGTATCGCCATAATGACC 106802 32 100.0 32 ................................ AATCTTCGCAGGACTGCAGACACGAGAGCAAA 106738 32 100.0 33 ................................ CCTGTCCTTTAACGACAACAAAAAGCGGTGCAA 106673 32 100.0 36 ................................ AGACCTCAATAATGTTTGCATTATGACGCAGTGGCC 106605 32 100.0 34 ................................ TGCAAAGCGAGCGTCAGGATTTCGGAACTTACGA 106539 32 100.0 34 ................................ TACCATCAACAACAGCTATTTTGTGAATCATAAA 106473 32 100.0 33 ................................ AACCGTCTCAAAGCATCCACAAATCTCCCTACG 106408 32 100.0 32 ................................ ATTTTTCAGACAAAAGTGCCTACCTTTGCAGC 106344 32 100.0 33 ................................ TTGTCCGAGTCGCTAAATTGTCCGGGCTTGCCA 106279 32 100.0 35 ................................ TTTTCCGCAAAGATAGTCTATATCATGTGTTGTGA 106212 32 93.8 0 ....................A........G.. | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.8 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ACATCTATCCGTTTCCTGGCCTTGGACTTGCTTCTCTCGTAGGCGTTGCCCACAATATCAAGTTTTTCCTCCTCGACAAGTCTGGCCCAGTACGCATGCACTCTGTCACGAACCACTTCCGAGTAACCTTGCAGTTTCTCATCCCAAAGTTGGACATCCTTCTGGTGATTGTACAGATACGTCAGTCCACGCGCAACATCTCTTATCTGCTCTGGGGATAGGTCATGTATAAACCCGACATTGAGCAATATCAAAGTACATACCCTACCGCTGGCATCGCGATAGGACTCCTTCAGACGGTAATACTTCTCGTCTTTACACGTCTGTGGGTTGTAACGTATTTGGGACGTAAAATTCATGCCGCAAAGATAAGCAATCCCTACGACATTGCTGTGTTCTACATTGCGATTTTGAGCAGTTTGACCACGCAAACCCCTATAAACACTGGAAAAAATTCTGAAAAAAAACATTAGAGCGTCAAACTTGGGTTAACACTAATT # Right flank : CACCTACACTCAGATTCTTGAAAGATAGAAGATTTTGTATGTGCGTGCAGAATACTATAGGAATCCCTCGCACAAGCCTCAAGGCTGCAAGGAACAGGCAAATCCTTTGCGGAATCTTTGCGACCTTTGCGACTTGGCGAGATTTTTTCGGAGCAAGAGGATGGGGATATAACAAATCTTTGCAACCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGGGATTTTTCGTGGTAAGGGAATGGGGATAGAACGAATCTTTGCGACCTCTGCGACTTGGCGGGATTTTTCGAGGCAAGGGGATGAGGATAGAACAAATCTTAGCGAGCGTGGAGCTTGGCGAGGGGGCTTTCGTGGCTGGAGGACGGTGATAGACGCAGTGAAAGGGTATTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 113914-110124 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTU01000005.1 Prevotella sp. R5003 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 113913 32 100.0 34 ................................ TGTCATGAATACCTTTTCGCCACGTTTCAATCGG 113847 32 100.0 33 ................................ ATTTATGTCAAAAAACAACATCCCGCCTCTTTT 113782 32 100.0 32 ................................ TATCGGTCAGCCCTCTGTTGGTTCATATCAAT 113718 32 100.0 35 ................................ CGACTATTTCAATCCGTTATATCAGCGACTTGGAC 113651 32 100.0 34 ................................ GTATTCTCTTGATGACCTCGGCACGTCCGCACCT 113585 32 100.0 34 ................................ CGGGACACCTATCATATTAATGTCGACGCAGCCC 113519 32 100.0 34 ................................ TTGATGATCTCGGAGGTAACGCACTTGTCGGTGC 113453 32 100.0 32 ................................ TGCTGCCGTTGCATCATATGTTAGTAGCTACG 113389 32 100.0 34 ................................ CTTTTTGACGACCCGAACCTTTGTACGTCATTGT 113323 32 100.0 34 ................................ CGAAGAACCCTGCTACTGGTGTTCGTGATGACCT 113257 32 100.0 34 ................................ ATGATACGTATCACGTTAATGTCGATGCAGCCCA 113191 32 100.0 35 ................................ TTCACCGTGGCTTATGTAAGTCCGTTGAAAGTGGT 113124 32 100.0 34 ................................ CTATGTAGCTGTGATAGTCCTGACTCTGTGTCTA 113058 32 100.0 34 ................................ TAATCACTGGTTGCCTACCGTTCATACTTTCAAA 112992 32 100.0 34 ................................ TCCCCGTCCGTTTTATCGGGCTTATGGGCGTGGT 112926 32 100.0 34 ................................ CTCCTGCGTCAAGAAGGCATTATCCCGGTGGTCC 112860 32 100.0 35 ................................ CAACAGTGAAGTGAGTAATCTAATAGGCACGAATG 112793 32 100.0 34 ................................ AACATTTCCACCTCTGCCAGTCCACTGGCTTCAC 112727 32 100.0 33 ................................ ACGCTGTCAAAGAGATTATTAATACGTTTCACA 112662 32 100.0 34 ................................ AGCGAAGCAGGACATATTACAAGCACTGGCCACG 112596 32 100.0 35 ................................ TTAGCCAGTTCGAAGCAGGCATTGCGTGCGTAGAT 112529 32 100.0 35 ................................ AGGATAACGGATATTGTCGATTAAGTGAGTATAAT 112462 32 100.0 34 ................................ ACTACGTGCTGTCGATGCAATTTGTTGAGCGCAT 112396 32 100.0 33 ................................ AAGGGAACAGAAAAGACCGTTGCCGACTTGTCC 112331 32 100.0 35 ................................ AGTCCACACCTATTTTGTCACATAGACCCCCCAAA 112264 32 100.0 34 ................................ TACGCTGCGCTGCGCTTGCGTCCTCAGCCACTAA 112198 32 100.0 35 ................................ TTTGCTAAATAGTTTTGGTATATACTTAAATTATA 112131 32 100.0 34 ................................ AATTCGAATTTAAGATTGTTCTCAGCCATAAAGT 112065 32 100.0 34 ................................ CTCTATCAGCGGCTCCATACGTCCCGCCGCCCAG 111999 32 100.0 34 ................................ TTTGAATGGGCGTGTCACTGGGCTGTGCACTGTG 111933 32 100.0 33 ................................ TGACAGAGCTGCAGAGGCCATCGAGAATCACAT 111868 32 100.0 34 ................................ ACTCCTTGCTGGTCTTGATACTCTCCATAATGGA 111802 32 100.0 34 ................................ CTGTGTGCTCTGTCCTCTGCCTGGCAACAATCAG 111736 32 100.0 34 ................................ TTCCTGGGCCTCGGCTATTTCCTGCTTCTTCACA 111670 32 100.0 35 ................................ CGGATAATTGGGATAGCCGTAGCCAACACCCCAAC 111603 32 100.0 34 ................................ CGCATCCGGCTGGAGGCTATCGAACTCTACGAAT 111537 32 100.0 34 ................................ AGTAGCTCAACTGGATAGAGCAACTGCCTTCTAA 111471 32 100.0 34 ................................ CTGAAAGAGTTGCGACCGAGGATGGAGAGATGGC 111405 32 100.0 34 ................................ ACAAAGGAACGTAGTTTAACGAAGAAAGACTGCG 111339 32 100.0 34 ................................ ATTAATACGTATAATTATGATTACAACTAATGAC 111273 32 100.0 34 ................................ AACTTAGAGCTGTCTACGCTTGTGCGTGTAGTCG 111207 32 100.0 34 ................................ CTTAATATGGCTTGATTTGTTAGCACCTCCGCAG 111141 32 100.0 32 ................................ AATTATCTAAAGATTATGCGCCGACATGCTGA 111077 32 100.0 33 ................................ TTAAACTCACGTCTCCAGTTCTCTTTCAGCGAA 111012 32 100.0 33 ................................ CCTTTAGTATGCGTAGTAAGTAACCTTGATACC 110947 32 100.0 33 ................................ TTTGAATGGGCGTGTCACTGGGCTGTGCACTGT 110882 32 100.0 35 ................................ TTTTCCTCTGCGTCTATATAAGACTGCATCGTATC 110815 32 100.0 34 ................................ CTGAAAGAGTTGCGACCGAGGATGGAGAGATGGC 110749 32 100.0 33 ................................ ATAAAGGAACGCTACACAGGCAAGGACAAGGAC 110684 32 100.0 33 ................................ ATGTCAGACATGCAGCAGACATAACGAGAGGGG 110619 32 100.0 33 ................................ TTGTTTCTCCGTTAATTACGACGGTTCACTTCT 110554 32 100.0 34 ................................ CGCCATAGGAACTTGACTTAATTTTTTGGAAAGA 110488 32 100.0 36 ................................ AAAAGGTCAAGACCATAGTTACGATACCGAGGTTGT 110420 32 100.0 32 ................................ TGTACTGAATCTTCTAATTGGTCACAAGTGGC 110356 32 96.9 36 ........T....................... TGCGTCAACTAAGATTCTCTACCCCCGAGCGGAGAC 110288 32 100.0 34 ................................ AAATCACGGAACGCACCCACCTTTAGGTTTGGCA 110222 32 100.0 35 ................................ CTCGACCTTCCTGTGTGTTTCCTTTGGCTCGTACA 110155 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 58 32 99.9 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ATATGTTCGTACTGGTTACTTATGATGTGAATATCACATCGCCTTTAGGACAAAACCGACTCAGACAGGTTGCTAAAACATGTCTTAACTACGGAAAGCGCGTTCAAAATTCTGTATTCGAATGCGTCCTGACTGAAGCTCAATTTGTACTGCTAAAGGATAAGCTGTCTGAAATAATAAGTCAATCGGATGACAGCATTTGTTTCTATAAATTAGGTAACAATTGGAAAAGACATGTAGAAAGAATCGGCAAGGACACGTCAGTCGATGTGACTGACGTCTTAATATTATAATGCACTTCACCCATACTTACTCTCAGAATGATTTCGTTTATGCGAACCCTAACCGTTGCACTAAAAGCAGGAATTTTCGCAGAGACTAATACACAGGCAGTTAAGCTTTTTGAAAGGACAATATGCATTTAAATAGCTATGCTTTTCGCCATGTTCGCAAAATATAGTAACTTTGCCTCTGATTATTAGGCAATTGTCTAATAAGCG # Right flank : AGCCCCTCTATATGTATGAACTTAACCCAACTTTGACATCGTATTTTGCTTAGTTGTTCTGTATCAGCAATTTAGTGTTTTTAAAAAGTCCTACTGTGTTCTACAGATTTTTATTTTTTTAAATGGCACTTTACTGATTTTCAACAACTCGTAGATTTCAGCTGCACTATCTGTAGGCACACTGCACAGTCTGGTCTCGACAGCCTCTCCAAGCGCATTTACTGCTGTGGTAGTAACTGCTTTTTGAGTCTTCATGATCCGCATGATCTCCGACCAGTACGGTGTCGAACGCTCCCGCCCATGCTCATCCTTGCCTTGCTTTCGCCGGGCAACCTTCATCTGATGGCGCACGGTGTTTACTATCCAGTAAGCCAGCAGCCCTAAGAAAAGGTGTGCGTCTGCCCTATTGTCAGTCTGGTGGTATATGGGCCTGAGGCTGAGGTCGGTTTTGAGCTGCCGGTTGGAGCATTCTATTTCACGTATAAGATTATAGTAGTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 144601-148304 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTU01000005.1 Prevotella sp. R5003 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144601 36 100.0 30 .................................... TGACCGACAGAGTTCAAGAATGGGCCATAT 144667 36 100.0 29 .................................... ATATAGTGAAAATATAGAAACAAATAGTG 144732 36 100.0 29 .................................... GAGTATATGCAACTAACTCAACATTAAGA 144797 36 100.0 29 .................................... TGGACGAGGTCGTCACGTACTCCAGTTGC 144862 36 100.0 30 .................................... CTGTAGTCATCGAGACATAAGAACCTTCAG 144928 36 100.0 29 .................................... AAGATTTGTTAACAAATCCAGTCCGTAGT 144993 36 100.0 29 .................................... CGCAGGATGCTCATATAGCTCAGACCTGG 145058 36 100.0 29 .................................... GACAAACTCAAAGATGATGGTGCGCTATG 145123 36 100.0 30 .................................... GCTGCCATCGTGAACTCGATGCCCTCCAAA 145189 36 100.0 29 .................................... GCAAGAGAGCCGAAGAAATCAACAGGCAG 145254 36 100.0 30 .................................... GACAAAGCGCATTTCTATACTCAGAAGAAA 145320 36 100.0 30 .................................... TGAACGATGTCTCTTGCGAGCCGTTCCTGA 145386 36 100.0 30 .................................... ACTATCTTCGATGCTTTCACTTGGCTCTTA 145452 36 100.0 30 .................................... TCATGGACGGTGAGGTAAAGCACGACCATG 145518 36 100.0 29 .................................... TATACAGCCACAGCAAGCGGCACCATCGC 145583 36 100.0 30 .................................... GCAAGCATCACGGTATCATCGCAATACCTG 145649 36 100.0 29 .................................... CCAGCGGTTTTATACTAAATACAGTAAAC 145714 36 100.0 30 .................................... GGTTATCTCAAACTCAACACAGCCAGCACG 145780 36 100.0 29 .................................... AATCTGAATTTCGCGTCGTTCGAGAAACG 145845 36 100.0 30 .................................... GGGATATATCACCAAGATAGAGACATTCAA 145911 36 100.0 29 .................................... AGGCTTCGAGAATGGTCTCTATGCTCGTG 145976 36 100.0 29 .................................... TCCATCGCAATACATAGCATCATAACCGA 146041 36 100.0 29 .................................... GCTTGCTCTTGCGTGTGTCATGCCATGCA 146106 36 100.0 30 .................................... TGATAAAACGCTTTTTGAACAAGGAAAGGT 146172 36 100.0 30 .................................... CACACACCGAAGATGCAAAGTACCTCCGTC 146238 36 100.0 30 .................................... GAGAACGACTGGCAGCGGCTCGCACAGTTC 146304 36 100.0 29 .................................... TAACTACTATGATAGTGGCAACCTCATGC 146369 36 100.0 29 .................................... CGTCCGCAACCATCCCAAAAACTATTCGG 146434 36 100.0 29 .................................... TGGCCTTCGAGGCCTTCTCGGCCTGTGCG 146499 36 100.0 29 .................................... CTTCGATTTCTCGTTGTTCAGATTGTACT 146564 36 100.0 30 .................................... CCAACGTGGTAACCCTGACCTATTAGGATG 146630 36 100.0 30 .................................... CAAGAGCACGAACGTCTGAAATGGTCGACA 146696 36 100.0 30 .................................... TTTTCGTTCAATGCTACTTTGAACAAGTCG 146762 36 100.0 29 .................................... GTGGCAGTGCTAACATTCCTAAAGTATTA 146827 36 100.0 30 .................................... CGTAATAAGGGAAACGAGGAGTGCAAAATG 146893 36 100.0 29 .................................... CTGGAGGCTATCTATAAGAGCGCCGACCC 146958 36 100.0 30 .................................... CGTGATGAATTTACTTACAACGGGGTTTGG 147024 36 100.0 30 .................................... GTTTGCCAAGCTATTAGGCGTCAGTCCTCA 147090 36 100.0 30 .................................... TTTGGACTCTCTTTGCAATTCCCTAATATG 147156 36 100.0 29 .................................... TCGATACTGAATCGACTACGACTCGCAAA 147221 36 100.0 30 .................................... GGGCAGCGTCGACGTTGATGCTGTATGTGA 147287 36 100.0 29 .................................... TTTATGTTTAATTCTTCTATTGATAGATA 147352 36 100.0 30 .................................... TTTAATTTAAAAATAAAGAGCATAAATTGT 147418 36 100.0 29 .................................... CCGCAATGAGGTCACCGGCAAAAAAACGA 147483 36 100.0 29 .................................... GCTTTCCAGATGAAGAGTAACGGCAGTAG 147548 36 100.0 29 .................................... ACTAATTGTTATATGCTTGCAAGTATCAA 147613 36 100.0 30 .................................... AGTGTTCAGCACCATTGCGGTCACATCCTT 147679 36 100.0 29 .................................... CAGAAATTCTTTCATTGCCGTTTGATTTA 147744 36 100.0 30 .................................... GCGGCAGCCTTTCGGGGTTGGGCAGGGCGA 147810 36 100.0 30 .................................... GCAGCGTCTTGTCCACCGCTCCATTGATAT 147876 36 100.0 29 .................................... ATATTTATTGTGACCCGCATGGGGTAATG 147941 36 100.0 30 .................................... TAGAAGGGGCGCAATATCTCCTTATCGCTG 148007 36 100.0 29 .................................... TCGTAATGATACGAATGAACTACACCGAC 148072 36 100.0 30 .................................... CAAGATGCCAAAGGCCCGACAATTCAAGCA 148138 36 100.0 30 .................................... GATGGCATGCCGGGTCATCCACGCATCCAT 148204 36 100.0 29 .................................... TCGCCGATAACGCCTATGCGCTGCTGTTC 148269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 57 36 100.0 30 GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Left flank : AAATTCTATAAAGGTGAAACAAAAAAGCTTTCCTTGCCAGTTCTTATATGACTTTTAACCGACTTAATGCATATCATATCATGTGGCTGTTCGTATTCTTCGACTTGCCTGTGACTACAAAGAAAGAACGCCACGACGCAGCACTCTTCCGTAAGAACCTGGAGAAAGATGGCTTCTCCATGATGCAATTTTCTGTTTATATCAGGCATTGCGGTTCCTATGAGAGTATGGATGTTCACGTCAAAAGGGTAAAAAGCCTTATACCAAAATATGGGGCCGTAAGTATTCTCTCGGTTACAGACAAGCAATACAGTAATATATATAACTTCCGTGGAGTACCTAAAAATCAGAAACTAAAAAAAGAAATAAAACATATCAGCGAACCGATACAATTAGAACTTTTTTAGTATCTTTGCACTGGAAATAGACCTACACTTCCGTTTTTTTTATCTCTCCAATGGCCTTGAATCTCTTTATTTAAGGGCAATTTAGAGAATAAG # Right flank : CTCTGCACTGCCCAGTCACTCTATGAGCGAGTTGCGGTTTGATTAAAGAAACCTCCATTTGAGACACTATACAATTTGGCCCTTGCTTTGCCGTTTCTGGCTTAGCAAGGGCTTTCTTTCGTAGAAAGCCCGTTTAAACTTCCCCTTGTTTTAGTCTCTGCATAATTATTTTTGCCAATATTATTGGTAATTTCTTGCAGATATGGCCATTTATTTGTACCTTTGTATAGTTCTTTTAATTATATAGATACTATACATATTTATGGCTATTCCAGAAGAGATAAAGTCAGTCGCCCGCCCCAAAAGTACGATAGTCCGACAGAGAGGCAGTCGTTTTGTCGTCATAAAAAGGACGAGCAAAAGAATTAACGGGAAACCTGTCCCCGTAGACCAAGGAACGGTAGGAGAAATTGTAAACGGCAAGTTTGTCGAGGGCTCATATATGCGCAAGAAAAATCAAGTGGATATTAAAGATTATGGAGAGGTGGCTCTCTGTGACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 153499-153723 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPTU01000005.1 Prevotella sp. R5003 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 153499 27 96.3 38 ......G.................... TGGAAATCAGATGTATTGAGTATTGTCCAGTTGCGGTT 153564 27 100.0 39 ........................... GTACTTGCCGGTCTCACCCGCGGCCGTTACGTTGCGGTC 153630 27 100.0 39 ........................... AACACCTGGCGCTCATCAATCAAGCTGTGGGTTGCGGTT 153696 27 85.2 0 .................C...G.A..G | G [153717] ========== ====== ====== ====== =========================== ======================================= ================== 4 27 95.4 39 TGATGTAGGAATAGAACGATATACAAC # Left flank : CTTTCCATTCACGCCCACATCCCGCAGCGCCAGTTCATAGGCGACTCGCAGGAACTCATTCAGAAACTCAACACGATTATCAATAACTCTTTAAAAACAATAAAAGATGGAATCATTACTCTTGCCAATCATTAATTACATTTCACAATCATTCCCCGAAATTCCTTACGTCGACGAGGACTACGGACAGCTCGAAGCCATCGACAACGAGAACATGGATAACTATCCCGTCGTATTCCCCTGCGTCCTCATCAATACGGATTCCGTCGACTGGTCGTCCCTTTCTGCAAAATCACAGAAAGGCAATGCGCACATCTGCGTCCGGCTCTGCATCGACTGTTATGCCGACACGCACTTCGGCTCTAACACTACAGATAAAATAAAGGAACGCGCCGACCTTGTCCACTCCCTCCACGCCGCGCTCCAGACCTACCGACCACTCGCCGTCGGCGCGCTCGTCAGAACCAAGTCAAAGTTCTACGCCTGGTTCCAGTTGCGGT # Right flank : GATAGGCGGCACTACTTTTGATAAGATAGGCTGCTCTCGGGAATGAAAAGAAAAACGATGTTTTTCTTTGTCATCCCACTCGTTTGTACTATCTTTGGGTAAGATAGGCTGCACCTCGGAAATAAAAATAAAACGCGTTTTATTTTGTATTTCCCTCGGTTTGCACTATCTTTGCAAAAAAAGAAAGGAATAATGAATGAAACCGATACTCAACGACTATCACAAGAAGATCAACGAGGTGAAACTCCAGTCCGTGGAATCCTGGAGCAAGCTGAAACTGTCGCACAAAGAGTGCTTAAATCAATTCAAGCGGTTGCGGGAACAACGGATTGCAAGAGAGTCCAAATCGCTCGCTTAACAGATTTTGCCAAGAATAACAAATGCTGGATAGATTCACCTGAATCACTTGGCGATTTTGCTGATAGAGGTTCGGAGAACGAAGTTTATCTATCCAAAGACAATGATGTTGTTTATAAACTGAATGACTTCCGTTATTCAGA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATGTAGGAATAGAACGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //