Array 1 6653-6439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROK01000147.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001342 CFSAN001342_contig0146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6652 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 6591 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 6529 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 6468 29 96.6 0 ............T................ | A [6441] ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGACCAGGCTACCCGCGCGGTAGTTCGTCGACA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-916 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROK01000236.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001342 CFSAN001342_contig0235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34 29 100.0 31 ............................. GCCACTTATCAGCAAACCGGGCATCCAGAAC 94 29 100.0 33 ............................. ACGAGTCAACAGCGGTAGCCATTGCAGGCATTT G [116] 157 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT G [173] 219 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 280 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 402 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 463 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 524 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 585 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 646 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 707 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 768 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 829 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 890 27 93.1 0 .....-...........-........... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCTGCCGTCGCCGTCGCCATATCCGGCGCTGTG # Right flank : AGCGGCTAAACCTGCCGGTTATCGCTGAGCAGGTGTTCCCCGNGTCAGCGGGGATAGCCGTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1155-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROK01000226.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001342 CFSAN001342_contig0225, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1154 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1093 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1032 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 971 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 910 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 849 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 788 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 727 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 666 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 605 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 544 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 483 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 422 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 361 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 300 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 239 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 178 29 100.0 33 ............................. TACGAATAAACAGATTTTTTGCGATATCTCTGC 116 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGGATAAACCGCCGAACGCTCAACGGGGAGTGATCGAGAATC # Right flank : GTTTACCTGGTTCGTCTGGTTCAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16540-17241 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROK01000080.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001342 CFSAN001342_contig0079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16540 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 16601 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 16662 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 16723 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 16784 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 16845 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 16906 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 16967 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 17028 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 17089 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 17150 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 17211 29 100.0 0 ............................. | C,A [17216,17235] ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTACAGACCGCTCATTTGTTATAAATATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13132-13336 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROK01000093.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001342 CFSAN001342_contig0092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13132 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 13193 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 13254 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 13315 22 75.9 0 ......................------- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : | # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //