Array 1 1051779-1052783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026379.1 Salmonella enterica subsp. enterica serovar Senftenberg strain N17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1051779 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 1051840 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 1051901 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 1051962 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 1052023 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 1052084 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 1052145 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 1052206 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 1052267 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 1052328 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 1052389 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 1052451 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 1052512 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 1052573 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 1052634 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 1052695 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 1052756 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1069455-1072417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026379.1 Salmonella enterica subsp. enterica serovar Senftenberg strain N17 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1069455 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 1069516 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1069577 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 1069638 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 1069699 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 1069760 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 1069821 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 1069883 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 1069945 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 1070006 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 1070067 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 1070128 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 1070189 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 1070250 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 1070311 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 1070372 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 1070434 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 1070495 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 1070556 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 1070617 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 1070678 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 1070739 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 1070800 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 1070861 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 1070923 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 1070984 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 1071045 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1071106 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 1071167 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 1071228 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 1071289 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 1071350 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 1071411 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 1071472 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 1071533 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 1071594 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 1071655 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 1071716 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 1071777 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 1071838 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 1071899 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 1071960 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 1072021 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 1072082 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 1072143 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 1072204 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1072265 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1072327 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1072388 29 96.6 0 A............................ | A [1072414] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //