Array 1 3036401-3035168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039585.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014859 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3036400 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3036339 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3036278 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3036217 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3036156 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3036094 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3036033 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3035972 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3035911 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3035850 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3035789 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3035728 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3035667 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3035605 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3035502 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3035441 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3035380 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3035319 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3035258 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3035197 29 96.6 0 A............................ | A [3035170] ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3054148-3052533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039585.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014859 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3054147 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3054086 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3054025 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3053964 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3053903 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3053842 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3053781 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3053720 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3053659 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3053598 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3053537 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3053476 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3053415 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3053354 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3053293 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3053232 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3053171 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3053110 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3053048 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3052987 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3052926 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3052865 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3052804 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3052743 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3052682 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3052621 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3052560 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //