Array 1 107871-106394 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNQ01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1571 NODE_15_length_124942_cov_4.73921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107870 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107809 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107747 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107686 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107625 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107564 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107503 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107442 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107381 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107320 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107259 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107198 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107137 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107075 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106972 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106911 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106850 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106789 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106728 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106667 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106606 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106545 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106484 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106423 29 96.6 0 A............................ | A [106396] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124943-124002 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNQ01000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1571 NODE_15_length_124942_cov_4.73921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124942 26 89.7 32 ---.......................... AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124884 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124823 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124762 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124701 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124640 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124579 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124517 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124456 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124395 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124334 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124273 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124212 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124151 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124090 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124029 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 637-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNQ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1571 NODE_2_length_281871_cov_4.56396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 636 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 575 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 514 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 453 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 392 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 331 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 270 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 209 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 148 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 87 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : A # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //