Array 1 220537-218921 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQT01000004.1 Salmonella enterica subsp. enterica serovar Newport strain NY_FSL S10-1755 NODE_4_length_667524_cov_29.1953_ID_3369, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220536 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 220475 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 220414 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 220353 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 220292 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 220231 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 220170 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 220109 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 220048 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 219987 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 219926 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 219865 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 219804 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 219743 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 219682 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 219621 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 219560 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 219499 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 219438 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 219377 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 219316 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 219255 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 219194 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 219133 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 219072 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 219011 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 218950 29 100.0 0 ............................. | A [218923] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238392-237206 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQT01000004.1 Salmonella enterica subsp. enterica serovar Newport strain NY_FSL S10-1755 NODE_4_length_667524_cov_29.1953_ID_3369, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238391 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 238330 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 238269 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 238208 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 238147 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 238086 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 238025 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 237964 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 237903 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 237842 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 237781 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 237720 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 237659 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 237598 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 237537 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 237476 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 237415 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 237354 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 237293 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 237233 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //