Array 1 620468-621089 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483354.1 Streptococcus equi subsp. zooepidemicus strain NCTC11606 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 620468 26 100.0 39 .......................... TGCTGACCCAAGCCAAGTGGGACATAATACTGGGTCTCG 620533 26 100.0 41 .......................... AAAAAATCAACTAGCCACTGGTTTCCTTTACGAACGTCTCG 620600 26 100.0 39 .......................... AAACTCAGCAATAGCTGATAGGAGGGTCAAAAAGTCTCG 620665 26 100.0 40 .......................... TTTTTTGACATTTTTTTGATAAGCTACAGCGATTGTCTCG 620731 26 100.0 41 .......................... GACTGTTACCCTAATAATTTTTTTAGTTGTGGTTGGTCTCG 620798 26 100.0 39 .......................... ATCTTTGTGATCAGTCACTAGTAAGATCGTTAAGTCTCG 620863 26 96.2 41 ...T...................... TAGTCAGTCTCCGCTAAGGCAGGAGACAAGCCCAGGTCTCG 620930 26 100.0 41 .......................... CACATATAGCGGAACAATCGGACGCTATCATGGAGGTCTCG 620997 26 100.0 41 .......................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 621064 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================= ================== 10 26 98.5 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1407355-1406197 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483354.1 Streptococcus equi subsp. zooepidemicus strain NCTC11606 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1407354 36 100.0 30 .................................... TAAACCTGTCGCTGAATCCATTAAAGAGTT 1407288 36 100.0 30 .................................... TCAATAATCTGCTTTTCATACGCATTAAGA 1407222 36 100.0 30 .................................... TTATTTGTGTTAAACGTTCCTTGTTTGTTA 1407156 36 100.0 30 .................................... TAAATCATCTTGTATACTGCTACTTATCTC 1407090 36 100.0 30 .................................... TCATTGTCGAAATAAGCTAACTCTACATTA 1407024 36 100.0 30 .................................... TGTAGAGGCTACAGCTACCCTTTACGCAAT 1406958 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 1406892 36 100.0 30 .................................... TAGTCGGCGCTGGTTTTGGCACACAGGCGA 1406826 36 100.0 30 .................................... CCTGCAAGCTGAGATTAAGCTGGCAGCCCA 1406760 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1406694 36 100.0 30 .................................... AGCTATCAGACAGTGGAAAGATGATGGTAA 1406628 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 1406562 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1406496 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 1406430 36 100.0 30 .................................... TATCAAAAATAGTTTGTAAATTATCAATAT 1406364 36 97.2 30 ..................T................. TAAAGGTTATTGAAGAAACACCTGTTGATA 1406298 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 1406232 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.9 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //