Array 1 46067-45079 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDW01000036.1 Shewanella algae strain SYT3 NODE_2_length_46037_cov_92.020897, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46066 28 100.0 32 ............................ ACTAAGTGGGGTTTTGCTTTTAGAACAAACCT 46006 28 100.0 32 ............................ GCCAAGGCGGTGCCCTGTAGCTCACCAGAATG 45946 28 100.0 32 ............................ CTTAGCCGTGGCTTTGGCTTTTGTTTCATATA 45886 28 100.0 32 ............................ GAAACCTGAAAAGGAGAAAAGCGACAATGAGA 45826 28 100.0 32 ............................ AGAGCTTGGCCGAGCTGGGGAACGCTTCGTCC 45766 28 100.0 32 ............................ ATTGACACCATGCAAGTAGACCATCTGGTGTG 45706 28 100.0 32 ............................ ATATCAGGAAAAAGGTAGTCAACAGGCCACTC 45646 28 100.0 32 ............................ AACCATAAATAACATAGCTTCTCCTCAGAATC 45586 28 100.0 32 ............................ TTAGCAGTCATATAGCCATTCTTTATCGTGTA 45526 28 100.0 32 ............................ TTATGATTATTGTTGACAGTGTAGCAATATGC 45466 28 100.0 32 ............................ TCCTATCGATATTGGTGATGCCGTTTTCTATG 45406 28 100.0 32 ............................ TATTGGGTACCTAGCTGCTGATGGTCTTTGCT 45346 28 100.0 32 ............................ AACTCCCTGTTTTCCATTGACGTTATTCTTCG 45286 28 100.0 32 ............................ TGGAAAAGCAGTGGAAACACCTTTACGTCAAG 45226 28 100.0 32 ............................ ATACGGATATCGTGGGCTCAATCCGCAAGATC 45166 28 100.0 32 ............................ AGTTAGCACCGCCATCATCTGAATAAACCATT 45106 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : GCTTAGAAATTCTTGTCAGCAAGCCCAAGGTCACGCGCAA # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTCGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAACGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38547-40014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDW01000075.1 Shewanella algae strain SYT3 NODE_86_length_40000_cov_94.084373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38547 28 100.0 32 ............................ TATTAATCGAGTATCTAGTGATGGAACGTTTA 38607 28 100.0 32 ............................ TGCCGCTGCAAATGGCTCTCGGCGGTGGAGAG 38667 28 100.0 32 ............................ ACGTAAAAAATCCGGCAACCACATGCTGGTGC 38727 28 100.0 32 ............................ GATCCTTGAATTCAAGGACGGCCAAGCACTGG 38787 28 100.0 32 ............................ GACACCGGCCAGGGCAATCATTAGCGATAGAA 38847 28 100.0 32 ............................ TGTTAGCTATACCAACAATACTGACCGGTCAT 38907 28 100.0 32 ............................ AAATTGCCGGATAACCTGAGTGTTGGCGGCTA 38967 28 100.0 32 ............................ ATTACGGCCAGTAAAAGGACGGATACCACCGT 39027 28 100.0 32 ............................ AGCTTGGTATGGACGGGTTAGGTTCGTTCACA 39087 28 100.0 32 ............................ TCGGCCTTTATCCGAGCCTGTTCTTGTTCCTG 39147 28 100.0 32 ............................ AGGAGAAGCCCTTGAGCTTGGTGCCGAAGGTG 39207 28 100.0 32 ............................ CGGGTTAATACCTTGCCGTTGTCTTCGGTATA 39267 28 100.0 32 ............................ AGCAAAGAGCGGGCCGGTGTTGCCCTTAGACT 39327 28 100.0 32 ............................ ATTTGGCATTGAAGTGATTGTAAATACCGATA 39387 28 100.0 32 ............................ TGGTTTGATGGACGCCATTGACGGCATTAAAA 39447 28 100.0 32 ............................ AAGCAGGTAATGAATACCATTGACGACTTATA 39507 28 100.0 32 ............................ TCACCACGGTGATCAATCACAGCGACGATTGA 39567 28 100.0 32 ............................ GGCTGTTGTTTTGTAGAACGCCTCACCAGCTT 39627 28 100.0 32 ............................ ACCGCAATGGTGGGTACCGTGTACTCGTTCGA 39687 28 100.0 32 ............................ GATGCGAAAATTCGTACGTACCTTTCGCAACC 39747 28 100.0 32 ............................ TTATGCCAAAGACCATTGACAACGTGCTTGCT 39807 28 100.0 32 ............................ ATATCGGCAAGGCGATCACCAGAGATTGCATA 39867 28 100.0 32 ............................ GTATGGCTGGTTGCGAATCTCAATGCCAATGT 39927 28 100.0 32 ............................ ACAGTCCACAATTGATTCTTCATTCTTCCTCT 39987 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTCAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTAGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : TTCTTGTCAGCAAGCCCAAGGTCACGCGCAATGTTCACTGCCGCCCAGGCAGCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //