Array 1 42281-41257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAEW010000044.1 Victivallis vadensis strain COR2-253-APC-1A Contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42280 30 100.0 37 .............................. ATTTCATCAATTTTCCGGAGGAACGCTTTGAAGTCCT 42213 30 100.0 36 .............................. GAAGCTATGAGAGTGGCGCAACGATTGATTGCGATC 42147 30 100.0 36 .............................. CTTCAAGAACTTGAATTACTTTGTTCGCACCCACAA 42081 30 100.0 36 .............................. CACGCTTCGAGGTTGAGCACGATATCCTGAAACGCG 42015 30 96.7 37 ....................A......... CTGGTCCGGCTGCGCGCCTATCAGGAGGAAATCCTGA 41948 30 93.3 36 ..T.....................G..... AAGCATGTTCATGTAGATAAAAGTTCCTGTCCTGAT 41882 30 100.0 36 .............................. TAGCAGCGGGTGGTGCTCATCGGGTGCCTCGCAGCA 41816 30 100.0 35 .............................. GCGAATACTCCCCATTTCTGCGCATCGGCGGAGGT 41751 30 96.7 38 ...T.......................... CCGGGGGCGGCGGGGATGCTGGCGATCTACCGGCCCAT 41683 30 100.0 35 .............................. CGTCTTACCTTATTCGCTTCGGTTCGTTGGAGGGT 41618 30 100.0 35 .............................. ACGGAGGAAGTTCTGTCGCGTTCAGAGAGAATGGA 41553 30 96.7 37 ..T........................... TCGCTGGTCGTCGTCGCCGACATCCACGACCGCCGGA 41486 30 100.0 36 .............................. TGGCAAGCTTGCTGAACAATGTCCGGAAAAACGTCA 41420 30 100.0 37 .............................. CGGCTTCGATCGCGTCTTTGACCTAGTAGTAGTTGGC 41353 30 96.7 37 ..T........................... GTCATCAAAATTGTACTGCCACTTTTCGGCGGGAATG 41286 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 98.6 36 GTCCCCCTCCACCCGTAGTGGATTAGAAAC # Left flank : CGCCTCCTGGAAAGCGTTCTCGACGACATCGAAAGAGGGGAGCTGGTGATGCGTCCGCAGCCGGCCGACCTCGCCACCTGGGAGCCGTCTTTCACTGGAGCGCCGCGTCTTTTCAGGCCTGAGTTGCTCCAGCTCGGAGAGCTTCCAGAAGGGTATCGCGTGACCCGATAACAACGCAATCGAGGGGGCCGCACAACGCCCCCTCTTTTATTCCGCACACTCATCTGGCACACTGGACGAATTAGCCAATTCGTACCTCCGGCACACTGAAATCGACGCATTTTGCGCAAACCTGGCGTCGGCCGCTTCCCCCCTCAGATCAGTTATTCTCGGCTGAGCATATCAGTTCTCAGAGTATATAGAAACTAAACGGCAAGAAACATTTTTCTTCCGTCGGGATG # Right flank : CATTCATCGCAAAGTCCGAACTGGTCGCCATGGCCAGGCGCCTTCCAACCGTAAGGGGGGCTTCGTTCATTACGTTCGGCTTCGTCACTATCGTTCCTTGTTATTTTGCAATTGCAAAATAATTTCCTCACATTCGTTCTCGGCGCTGACCACGCTTGTTATGTGCCGCAAAAATATTGTGGAAACCGATCGGTGCCTTACCTGTGCCAGTCGCCCGCGCGCCCCCGAAGGGCGTAGAGCGCGCATCCGGCAGCGGCATCTTGCCGCCCGCCGCTTTGCTTGCTCAGCGAAGGGCGGCGAGGGCGAATTCCACCAGATATTCGATGCCGACTTTCAGCGCCTCATCCGGGAAGTCGAACTTCGAGTTATGCAGCGCCGGACAATTCTCCCCGGTTCCGAGTTTCACGTAAACTCCCGGATATCTCTGCAAATAGTAGGCGAAATCCTCCGCCGCCATCGAGGATTCGGGAAGCTCGGTATATCCGGCTTCTCCGAAAGTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCCTCCACCCGTAGTGGATTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 8963-12642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAEW010000084.1 Victivallis vadensis strain COR2-253-APC-1A Contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8963 30 100.0 36 .............................. TCCACGGGTTATTCAGCTCCGGCGATGCTTTCCAAA 9029 30 100.0 37 .............................. GCGGCTTGCTTCGCGTCAGCGTGTGCGGAAATGGCGT 9096 30 100.0 37 .............................. CCGCTCCGTCGTTTTATGGGTGCAAATCCACGTTTCA 9163 30 100.0 36 .............................. CACTCCTTGCACTTCCGGTAACGTACCACCGGCCGC 9229 30 100.0 39 .............................. TCGGGGAAGCCGGACGGATCATCAGCGGCCAGACGGTGC 9298 30 100.0 36 .............................. TCCGGGTTGTAGAGCTGAAATCTGACCTCCACCCGC 9364 30 100.0 37 .............................. CATTAGAGAGAATGGAAACATTAGACACAATATTGTT 9431 30 100.0 37 .............................. AAGAGCGTGGCGAATGGGTTTATTTCGGATGATCCGG 9498 30 100.0 36 .............................. AAGAAAAACGTCATCTTCGCACTTCGGGCAATAGCT 9564 30 100.0 38 .............................. ACCGTGATCGTTACCGCGCTGGCAGATGTGACCTGCAA 9632 30 100.0 35 .............................. CATAAAATCGATCCTGCAAGAGAACCCCAGCTTGC 9697 30 100.0 35 .............................. TCACCGCGCGCCAGTTTGATGTGTGATTCAAAGAA 9762 30 100.0 36 .............................. TCGAACAGCAGATTGTTGTCACCGGTGAGCGTGACG 9828 30 100.0 36 .............................. CCTTCCACTGACGGCCTGTTTGAATCCACCGAAGCG 9894 30 100.0 37 .............................. TCTGCGCCCTTCGGAATGCCGAAATTGAAATTGAATA 9961 30 100.0 36 .............................. GATCGTAAGCCGCCAGAAGGCCGCCTCGGTCGTAAA 10027 30 100.0 35 .............................. TAAACATTGGAAATAAGCACTTCATACGTGCCGAA 10092 30 100.0 39 .............................. TGAGCAGCTGGCAAAATACAACATCGGCGAAAACTCCGG 10161 30 100.0 37 .............................. TTACTTCATCGAGGTTGAGAAGCAGTATCGCCAGCTG 10228 30 100.0 36 .............................. TCTGCTATCGATTGAATTCAAATGAATTCACAGGAA 10294 30 100.0 36 .............................. ACTGTGCTTTCGATCATAACTGCCAAACCTGCTGCA 10360 30 100.0 37 .............................. TTCCCCATTCATTTTCATATCGGTATTGTTTTTTGCG 10427 30 100.0 37 .............................. TTCTGCACGATCCGCAGCGCAGGGTCGGATGGCAAGC 10494 30 100.0 36 .............................. CCGGGATGAGCTTGCATAGCTCCAGCGGCGGGACGA 10560 30 100.0 36 .............................. AAGGACAATCAGTATTTCTACCTGATGGTGGTACGC 10626 30 100.0 36 .............................. CACGCACGCTGTATCTGGCGACGTTGACTCCGCAAC 10692 30 100.0 36 .............................. CAACCCGGCTTATCGTTCTGAAATACACTGCTGCCA 10758 30 100.0 37 .............................. GAAGCAACGCGACCGCTTCGGTAACAGCTTCCGGGGA 10825 30 100.0 36 .............................. AAATCACTGAAGAACTCTACCGCAACCTGCTTGACG 10891 30 100.0 36 .............................. CGTTCTCGGTCTCCTGCCGGGCGACCATCGCCCTGG 10957 30 100.0 37 .............................. GAGGAACTCTGTGCCGTCTGCAATGGGATCGGCCCGG 11024 30 100.0 39 .............................. CGCCAGAAGGCCCTTCCGAAGCGGTAACGCCTGAATAGA 11093 30 100.0 37 .............................. CTTTTGCAATCGAGCGCAAATCGAAGGACGATTTTCG 11160 30 100.0 35 .............................. CGCCAGACCGCTGCGCATCTTCCCTCTGGTGAAAG 11225 30 100.0 36 .............................. GAGAATGCAGCTCGGATCTGGAATAGTCGCCCTGCA 11291 30 100.0 35 .............................. GATTCAGTGCTGGCGGAAATTTCAGCGGTGAAGCC 11356 30 100.0 37 .............................. TGAACGAGCTACGCGCCAACCAGGTCGGAAAGATCAC 11423 30 100.0 36 .............................. CATTCGCGCGCTGCAAGGCAAGCTGGCGCCGGATCG 11489 30 100.0 36 .............................. AAATAGGCCATCTTCAGCACGTCGAACGCATCGTGA 11555 30 100.0 36 .............................. CTTCAATATTCAGATCCGCGGGCTTGTCGAGCGCGG 11621 30 100.0 37 .............................. GTAAATTGTTTGATTCGTTCGGGCCGGAAGGCTGTGT 11688 30 100.0 37 .............................. CCGTTGCAGCAGCGATTGAATATCTCAAGCAGGAGGT 11755 30 100.0 36 .............................. ACTCTTTCAAGAATATTGTTATCGCCGGTAGCGGCG 11821 30 100.0 37 .............................. GTGCTTGTGCGTCAGGCACAATTGGAGCGGCTGCTCC 11888 30 100.0 37 .............................. CATAATGATCCGTTACGCCAATCCGTCGCGCTCATGG 11955 30 100.0 35 .............................. TGGGTATGGGTGATTGAGTTCAAGCAAATCGAGGT 12020 30 100.0 37 .............................. CCCGGTGAAGCTGCTGTTTCGGCAGCCGGATTTACCC 12087 30 100.0 36 .............................. CTGCCCGTATTTGGCTGGAAGTAACCGATGTGAGAA 12153 30 100.0 35 .............................. CGCGAATGCGAGCGTTTAATGGGGTTTCCGGACGA 12218 30 100.0 37 .............................. AACTGGTGACGCTGTTTGTCCAATACAATCAGTTGAC 12285 30 100.0 35 .............................. CTTGAAACCGATGAAATAATTGATCGGGCCGACCG 12350 30 100.0 36 .............................. TGAATGCGGCCTGTTCCGCCTCGATGCTGCTCCCGA 12416 30 100.0 36 .............................. ATAGCGTTCGGATTCCTTGAAATCGTTCAGGTCGCC 12482 30 100.0 36 .............................. ATGATCGCGGTTCAGATCAAGATTGCACCAAAGCGG 12548 30 100.0 35 .............................. AAACTATGAGAGCTGAGTGCGCGGAACACATGAGC 12613 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 56 30 100.0 36 GTCCCCCTCCAACCGTAGTGGATTAGAAAC # Left flank : CGCTCAACCGTTCCGTCTCGTATCGGCAGCTTTTGCGTCTGGATTGCTATAAACTGATCAATTTTCTGCTGGAAGGCCGCGAATACCTTCCGTACCGGATAGGATACTGATATGTATGTGATCATTGTATATGACACGGAACACGACAACTGCGTCAAACTGCACAAGCAGTTGAAGAAGTACCTGTTCTGGAACCAGAATTCAGTCTTTGAAGGTACTGTAACCGTAGCGCAGTACGCAAAGATCAAACATATTCTGGAAGAAACCCGGGCTGAAAATAGTCACATCACATTTTATTCCATTGAAAACGAAAAATTCTTGTGTCGTGAAGAACAAGGTTCAGCCAAAGGGAATATCTCAAATATTCTTTAAGCATTGGCGGAAAGTCTGTTGCACGATTGAATACCGACAGGTGGAAATCCACGAAAAGGTACTCGAGCTGTTTGAAAACTAAATAATTTGACCTCAAAAAGACAGTGTGCTATATTAAAACATCACGG # Right flank : A # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCCTCCAACCGTAGTGGATTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 47-1199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAEW010000131.1 Victivallis vadensis strain COR2-253-APC-1A Contig_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 47 30 100.0 36 .............................. ACGAAATTCCGCCAATCCTGATTGGAAATTTCGATC 113 30 100.0 36 .............................. CATCGAAATTCTCCGCCGGCACGCCGCGCGCCGCGG 179 30 96.7 35 ..T........................... AAACTATGAGAGCTGAGTGCGCGGAACACATGAGC 244 30 100.0 35 .............................. ATGGAAAACGAACCCCTTGTGAAAGGCGGCTGCGG 309 30 100.0 37 .............................. CCTGCTCGATGAGTTTGCGCTGCACAAGGACCCGCGG 376 30 100.0 37 .............................. CGACGTGAAGATCGCGCGGCTCGAAGAGGAAAACGCG 443 30 100.0 36 .............................. TGGTCTCCAAGCTCGACAAGCAGGCGGAAAATATCA 509 30 100.0 36 .............................. ATCAGCAGTTGGTCGAGGCCGATCCGGCGGTAGATC 575 30 100.0 36 .............................. AAGATGTACACCTCGGAGAATATCCGGGTAACTGCC 641 30 100.0 37 .............................. TTTTAAGGCTTCCGACAATTCCGGGTGCTCATGCTTG 708 30 100.0 36 .............................. TAGATGTACACCTCGGAGAATATCCGGGTAACTGCC 774 30 100.0 36 .............................. ATCAGCAGTTGGTCGAGGCCGATCCGGCGGTAGATC 840 30 100.0 36 .............................. AAGATGTACACCTCGGAGAATATCCGGGTAACTGCC 906 30 100.0 37 .............................. TTTTAAGGCTTCCGACAATTCCGGGTGCTCATGCTTG 973 30 100.0 35 .............................. TAGATTTTTCGCCTCGACCAGCTCGGAATTCTGCA 1038 30 96.7 36 ...........C.................. GTCGAGCGCCTCGAAGATGGCGGGATTCTCGCGCAT 1104 30 93.3 36 ..T........C.................. GTATTGCCATTCAAAAGCGATTATCACTCACAGTGT 1170 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 98.9 36 GTCCCCCTCCAACCGTAGTGGATTAGAAAC # Left flank : GGATTAGAAACAAACTATGAGAGCTGAGTGCGCGGAACACATGAGCG # Right flank : ATAGTATGCAACTCGGTTTGCGCGCGGCGTGAAAGTTAGTTTGCGCAAGGTCGGTCTTGAGTGCGCAAACCAATTATAAAAAAATAGCCGGGCGGCGTGGGCCACTCGGCTATTATATATATAAGGTATAGGACGGTCTTATTCGTCTGGGAAATTGGTACGGCAGAACTGTTCGAGCAGTTTATCCAACTCATCCACGCGGCGGGCTACCTTTTCGGGGATCGGCGAACCCGTGCGGTACTTATCAATGCTCCAGCGGCTGCACAGCAGCAGCTCTGCGAGTCGCTCCGCTTGCAGCCCCCGGCACCTCATTTTAAATTCTTCCGTCGTCATACCTTACTGCCTCCGGTTTCCCGGAGGCGCTCCTTTCAATTATTCATTGTCGCAATCGGCACAGTCTTCATAATGATCATGAATATATTGGATAACCCTTTCCCTCTCGTCATCTAAGAAACATTCCATCGAGTCGTCCAGCCAGGTGCTGAACGTGTCGATAATGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCCTCCAACCGTAGTGGATTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //