Array 1 741-1220 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000143.1 Thermus scotoductus strain 29_S29 NODE_229_length_2800_cov_117.118_ID_457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 741 36 100.0 35 .................................... GAGGCGTTTAGGGGGGAGGCTAAGCGGTATGAGAG 812 36 100.0 38 .................................... CTACTATGTGGTGGGCAACACGGAGGAGCCAACGATGG 886 36 100.0 42 .................................... TCTGACTTTTTCGTCCTTGAGGGCCTCGCTATAGGCCGTGTT 964 36 100.0 43 .................................... TTGGACCCTTTCCCCACCTTCGCCTCGATCTCCTCGTAAATGG 1043 36 100.0 31 .................................... CGTGGGGGCGGCCCTACCTCTTCACCCTCCT 1110 36 100.0 39 .................................... AGCACTAGCTAAGATGGCAAAGAACTTGTTTGGTATTAA 1185 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 99.6 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AGTTTCCCAAGGGAGAGGCGGTGTACAAGCTTTTGTACCTGGAGTCTGAGCGGCAGGAAGGGAGGTGGGCGGAGCGGAGGTTGAAGGGTGTTGCCGAGGTGCAGGAGGTGTTGGAAGGGATGCTTCGGGAAAGGTATGCCCCCCGTACACAGACGCTTACACATAAATCTTGACACGACCGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCTGGAAGCCTGGGTGGCTTGTCTTTTTGGCTCTGCCAAGCTTTGTTCGCCGCCTGCTCTCCCGTCCCTGGCAAATGGGAACTAAACGGGCTTTCTCGGTCGCCAGGGCAGTAGGTGGTGGTGACCTCCCTCCACCTTTATGAGCCGAATCCCCTCTAACGGTGGCGCAGGGTCTTGGCGGAAGGGGCATGGGAGCGGGGTCTCCTGCCGGTGTTCGGATTTCACAGGTTGCCGCCGGTTCCCTGTTATCCTCCATAACCAGGTGGTGGGCAATGTGGAGAACAACCCGCGACCCCGACGCCCTTAGGGCTAGTTTTATCGCCCTTCGGGAGGCGGTTAGGCGAAAGGCCCTGGCCCTCGAGGCGCGGTATGAGAGGAAAAGGCGCCCCCTGGAGCGGGCCCGCCAGGAGTTCTTGCAGCTGCTCGAACACCTTCGGCAGCAAGGGGCAGAAGGCCGTTACCCAGCCTCCTTGCTCAAGCCCGCCCTCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 429-1985 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000157.1 Thermus scotoductus strain 29_S29 NODE_241_length_2559_cov_81.984_ID_481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 429 29 100.0 33 ............................. CGAACCCAGTACTCTCGGTCATAAAAACACAGC 491 29 100.0 33 ............................. TGATGGGGATCAGCCGGAGACGACCGGGCTGCC 553 29 100.0 32 ............................. CCCCTCAATCAGCGCAGTCATGCGTCCTCCCT 614 29 100.0 33 ............................. GCCTGTTTCGCCAGAGCTAGCGGGTCCACACGC 676 29 100.0 32 ............................. TATGCGGAGGATGACACCAACGGCCACCCCCA 737 29 96.6 32 ............................T GACCCGGCCAGCGTCCCGGCGGGCGTACATCA 798 29 100.0 32 ............................. CATTCCCGCCCTACCTGCACGCAGACGCCCAG 859 29 100.0 32 ............................. GGCGTCCACGAGGAGGAAGGGATGAAGACTCT 920 29 100.0 32 ............................. GTTAGAGAACAAGCCCACGATGGCCTGGGCGG 981 29 100.0 32 ............................. GCCCATGCCCTTGACTTTCCGCATTCCTCCGC 1042 29 96.6 32 ............................T GTGCCCGGTGGGCTGATGGGGCTGATGGGGCT 1103 29 100.0 31 ............................. TAGCAATGGGCGTCATCCAGGACATATCCAC 1163 29 100.0 32 ............................. AGAGAGCGAGCCTCAGGGCTGGAATGGACACG 1224 29 100.0 31 ............................. AAAGCGGCCTTCCCCCTCTTCCCGGAACCGA 1284 29 100.0 32 ............................. CCCCTCCGGCACGCTAGTCCCCCTGACTTTAG 1345 29 100.0 33 ............................. AGGGCCACGCCCAAACACGAACCCGGACCACTC 1407 29 100.0 32 ............................. GTTCTCCGCCGCATCCAGGACCCACTGAATGA 1468 29 96.6 32 ............................T CCCGGGCTAGCTGGCCAAACGCATCAAGGAGG 1529 29 100.0 32 ............................. ACGTCATCCCACGAGTCTATTCGCCGCCACCC 1590 29 100.0 32 ............................. AGTCCGGTGGGGGTGGCGGTCCTGTCATTGAC 1651 29 100.0 32 ............................. AACACCCAGCAATCTATGGCCTGGAAGACGTC 1712 29 100.0 32 ............................. ACCTGATTAGGGTCAGTATAGGCCAGTGTTCC 1773 29 100.0 32 ............................. AGACTATTTTCAATGGCCGCCTCGTGCGGGAT 1834 29 100.0 32 ............................. AGACGGCCCTTATCCACCACCTCAATCCGCCG 1895 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 1957 29 89.7 0 ..............C........A...T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : AGGTGGGGGTTGGCGCGGGCGAAGCGTTCCACGCCCCTCAGGGAGTCCACGCGGGAAAGAAAAGCCACCAGGATGAGGGCCAGGAGGCCCCAAAGGGGGTACTGCCGGTTGCGGGCCCGGGGGTCGGGGATCTGGGACAGGGCTTCGCGCAGGGTCATGCCCCCTCTTTACTCCAGGAGCCGCATATAGGTCAAGTCTGCTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGTG # Right flank : GAGAATGTACAACCCACATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGAAGGCGCACCGCGGTCTCGTGATGGGGAGCCAGGTTGAGGACGAGCAACTTGCCCCCCAGCTCCACCAGGCGGACCCACATAAAGAGTTGAAACACCCAGCGCAAGGTGGGCTTGGCTGTGGGTCTCCCCTTTTGATCCGGCAGGCTGGACCCCGTCCCCTCCAGCCTCCGCCTCAGCTCCCACTCCCCCAGGGCGTACACCAGAAGGGCCAGGGCCATCACCATCCCCAGGGCCATCACCCGCTCGGGCCGCTTCAAGAAGGTGCTCTCCGTAAAGAACAGGGGGTCTTTCAGAAACCGGAATCCCCGCTCCACCGTCCGGGCCTGGTCCTTGTACCGCCTCAGCACCTCCCAAGGGGGAAGCCCCTCCCGGTCCAGCACGTTCGTGGCCAGGATGAACCGCCCCAGCCCCCGCCTCGCCCGCTCCAGCTTCCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1127-871 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000182.1 Thermus scotoductus strain 29_S29 NODE_264_length_2001_cov_41.2273_ID_527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1126 36 100.0 37 .................................... TCCAAGAGCCACTCCAGGTTGAGGCGCTTGAGGAACT 1053 36 100.0 40 .................................... AAGTGTACGTAGTCGACCTTCTTCACCGACTCCTTCACCT 977 36 100.0 35 .................................... CTTCCAGACTAGGGCCGGGCACTCCACGCCATCAG 906 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CCAGCGAAGGCCCTAAATACCCAGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCCGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 674-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000218.1 Thermus scotoductus strain 29_S29 NODE_297_length_1449_cov_43.292_ID_593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 673 29 100.0 30 ............................. CAGGGCGTGGGCATCGCCCTCGGGGTGGCC 614 29 100.0 32 ............................. CGTAAATGGGCGGTAGGCAGACCTTCCGCCTC 553 29 100.0 32 ............................. TGGGTCTATGGCCGCACCCGACAGGAAGTGGC 492 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 431 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 370 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 310 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 249 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 188 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 127 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGATTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GATGGCGGAAGGCCTCTTACGGATCTGGCAGGCGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3138-3550 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000400.1 Thermus scotoductus strain 29_S29 NODE_46_length_13502_cov_41.0963_ID_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3138 36 100.0 37 .................................... CCCAGGGCCACGGCCATTGCTGTAAGCCCTACCACTA 3211 36 100.0 37 .................................... TCGTCGTACTCCTTGTACATCCACTCCTCGTAGCTAA 3284 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 3361 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 3438 36 100.0 41 .................................... TACCCTCGCACTGAGGGCATTCCTCGTACAGCTCAGCCGGG 3515 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1473-835 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000444.1 Thermus scotoductus strain 29_S29 NODE_64_length_11540_cov_34.8392_ID_127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1472 29 100.0 32 ............................. TCTTTGCGGCTTTCTGGTGGGGGGTTGCGGCT 1411 29 100.0 31 ............................. GAGGCAAAACCGGTTGAGAGGAGGGGGGCAC 1351 29 100.0 32 ............................. CTCCTGAGCCTAAGCCAGAGGAGAACCCGGAT 1290 29 100.0 32 ............................. CTGACCGATGACCCGATGGTGGATTACATCGG 1229 29 100.0 32 ............................. AACCCCCAACAGCTAGCCACCGAACCCTCGGT 1168 29 100.0 32 ............................. CTGGTCAAACAGTCTTCGTTTGGGCGCTATGT 1107 29 100.0 32 ............................. AGCTGGACTGGCTGATAGCCCTGCTTGAGGCC 1046 29 100.0 32 ............................. CGGCGTTGGGAGAGGAGGGTGTCCACCGGCCC 985 29 100.0 32 ............................. CTGAACGATCTGTTGGCAAAGGGGTCCAGTGC 924 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 863 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCACCTATTGGCCCTGGGGGTGGACCCGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCTAGGAAGGGCTTCGCGGTTTTAGAACAAGTTGGGAACCCATACCCATGTCCCCACCCTGGACACCCGGGTGCTGCCCAAAGGTACAGCCTACGTCTCCGACGTGGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-885 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELU01000053.1 Thermus scotoductus strain 29_S29 NODE_148_length_5520_cov_35.2635_ID_295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 62 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 123 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 183 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 244 29 100.0 32 ............................. CCCCCGTTGTTGATGAGGGCGGGCCTAGGGAA 305 29 100.0 33 ............................. GCGCGCCTAGCCGTTTGCCACCGGATCGGGACC 367 29 100.0 32 ............................. TTCCTCCACGATTTCCCCCAGGGGGCGGAGGC 428 29 100.0 33 ............................. GATGTAGTCCCTGGCGTCCTGCACGATGGCCGC 490 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 551 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 612 29 100.0 32 ............................. GAGCGCGGGATGTCCAGGGGGGAGCTTGCAAA 673 29 100.0 33 ............................. GCCCTCATAAAGGGGAAGTCGGCCCAAACGCCG 735 29 100.0 32 ............................. CTCCTGCTTGGGCCGGGGCCCCAGCCGAAGCG 796 29 100.0 32 ............................. GTGTCATAGAGGCTAGCCACAGAGGAATCAAA 857 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 33 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : | # Right flank : GCCTATCCATACGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGCTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGGGGAACCAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //