Array 1 26188-30274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGZ010000009.1 Porphyromonas levii strain DD15 JD27_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26188 32 90.6 34 .....A......G....T.............. GACTCCATCAGGCACTACAATGCCCATCGAGGTC 26254 32 90.6 35 .....A......G....T.............. ATGCAGGCTTGGCAGGAGGCAAACGAATCTGCCCT 26321 32 90.6 36 .....A......G....T.............. TGCAATACCTCCCGAACTGTCTTACCATGCCGCCTT 26389 32 90.6 34 .....A......G....T.............. GTCAAAGCTGACAGCAACAACCCATCCTCGTACA 26455 32 90.6 35 .....A......G....T.............. GAGAGATCTGGTAGCGTGACAAGCTCCTCCGCACC 26522 32 90.6 35 .....A......G....T.............. GTAAACATGCTGGCAGAGCTTACGGCAAGCAGCCC 26589 32 90.6 34 .....A......G....T.............. AACTTATAAAGAGAGGAACAGATGGCAGATTACA 26655 32 90.6 35 .....A......G....T.............. CTTGAGTCTATCGTACACCCTCTCGCCATACGCAT 26722 32 90.6 35 .....A......G....T.............. CCAACTCAAGAGACACCGCCCCAGAGAGTGGGTGG 26789 32 90.6 35 .....A......G....T.............. CCGTCTGCCGATGTAGCATAAGCGATGTGGAGGTA 26856 32 90.6 36 .....A......G....T.............. TCGGGATGTGGTATCACGCTGAGCATTGACGGAGTA 26924 32 90.6 35 .....A......G....T.............. GTCATTGTTCGTTGTGCTCGTTTTTACCTGTTAGC 26991 32 90.6 35 .....A......G....T.............. GGTTAATCCAAAACATGGCATGTACAAAGATTTTA 27058 32 90.6 34 .....A......G....T.............. AGCTCTCCACGTGTGAACTTAGGCTCTATCTTCA 27124 32 90.6 34 .....A......G....T.............. CGTTAGGCGCATACCTGATTTATTGCTACTCCCT 27190 32 90.6 34 .....A......G....T.............. GTAGATATCGCTCCACTGCTCGTCTGTCAAGCGC 27256 32 90.6 34 .....A......G....T.............. GAATACGCATAAAGATGTACATTTTTTAACTTAT 27322 32 90.6 34 .....A......G....T.............. GTTAAAGTAGAGCTTGCCAGACCTCTTATAGTGA 27388 32 90.6 35 .....A......G....T.............. TTTTAGTCTTGGGAGGACATTACACTCTATGTAAC 27455 32 90.6 36 .....A......G....T.............. GCATTGTAAACGATAAGACCTACACAATGTAAGTCT 27523 32 90.6 35 .....A......G....T.............. GAAGACATATACAAAGAGGCTGAGGTCAACGGGCT 27590 32 90.6 33 .....A......G....T.............. ATGCCTTTTGCTTTTAGCTCGTGCCACTCCTCC 27655 32 100.0 36 ................................ TGTGTGTATCTTTGCCATGAAGTTATTAATTTCTGC 27723 32 100.0 34 ................................ ATCGGCAAGAGCAAGGTGCTCAAACGCAATATAG 27789 32 100.0 35 ................................ CTAGTTATCCATCTGCGATAGATATAGTGAACATG 27856 32 100.0 34 ................................ AAAATAAATCTACTACATTTGCAGTGCGTTTTTA 27922 32 100.0 34 ................................ ACCACCATTAGCGGTGCGGACAGGGAGACGACGT 27988 32 100.0 34 ................................ ACAACGTACCTCCAGCAGGTACACACTACGAGGC 28054 32 100.0 35 ................................ CAGAGTATTATGCTGTAAAAGTGACCGGTGGCAAA 28121 32 100.0 34 ................................ GAGCTAGAAGAAGCCGTAAGGCTCGAATTGAAAA 28187 32 100.0 34 ................................ TTGGATACGATAGCGAGAGCTATTTCTCGCAGAT 28253 32 100.0 33 ................................ ATACATGCAAAATTGAAATATAAACTACTAAAC 28318 32 100.0 34 ................................ ATCTCTGCAACTCAGGCAGGTGGTAAGTTCCATA 28384 32 100.0 34 ................................ ATCGCTCCAAAGGATATGAACCTGTTAGTTATGT 28450 32 100.0 34 ................................ ATCTATATAGCTCTGAGGTAGCGAGCAGTGGAAT 28516 32 100.0 35 ................................ AGGAGAAGCCAGCAGATAACAAAAACGGCAAATAA 28583 32 100.0 34 ................................ ATCTGCTAAGCTCTTGCTGTATGGTATGCGCTCA 28649 32 100.0 34 ................................ AATAACGAAGAAGCAAACGAATCGGCACGCCTAC 28715 32 100.0 34 ................................ TGTTATGTCGCATATTGTCAGACAGCTTATACGA 28781 32 100.0 34 ................................ GGAATCATCGGAAAATGGAAGAGAGATAGAGGAC 28847 32 100.0 35 ................................ AGCGAAAGGTAATGCAGTCGGCAGGAACCACGAAA 28914 32 100.0 35 ................................ TGCAGACTGTCGAGCAGGTATTGTATCCCTGCCAC 28981 32 100.0 34 ................................ CGTCTGCCGATGTGGCGTAGGCAATGTGGAGGTA 29047 32 100.0 33 ................................ GTTCGTTCGAGGTAAGCGTCATACACGTAGTAC 29112 32 96.9 34 ...........................A.... CTATAAACTAGGAGGGGTAGACTTCGAGGAGTAT 29178 32 100.0 35 ................................ TCACCCTTGATGAGCGTCCACTTGTACTTGCGCGG 29245 32 100.0 34 ................................ TTGTAAAGTTTAGCAGCAGGACAGGCGACCGCTT 29311 32 100.0 34 ................................ AATAACCTCATGGAAAAGCAGTCCAAGAGCCTCA 29377 32 100.0 33 ................................ ACTACTCTACTGGAGAACAGATTGAGACGCAGC 29442 32 100.0 34 ................................ GTTGAGTGTTCCGTCTCGTCTAATAACTTGCGTG 29508 32 100.0 34 ................................ TTGCGTTGGTTCTTGCGTTGGGCGGCTCAAAAAG 29574 32 100.0 36 ................................ AGCCAACAAAGTTTCCGGGTAAAAACTCGTCTAATC 29642 32 100.0 35 ................................ ACCACCTACACTGATAGACTCGTGTACAAGTGGGT 29709 32 100.0 35 ................................ ATCGACACACTCAACCGAGTTCCGTTCGATAGCGT 29776 32 100.0 35 ................................ ATCAGGTCAAGATGTAAAAACGACACTTAAGACGA 29843 32 96.9 35 ..........G..................... AAAATAGGGATGTCCTACTATGTAGTCTATGTCGC 29910 32 100.0 36 ................................ ATCATTAGACCCAGCAGCGACAGATTGGGCAGGCTG 29978 32 90.6 33 .....A......G....T.............. TTACATGACGACAGGGAGCGTGTTAGAGGTGTA 30043 32 90.6 35 .....A......G....T.............. AACCGCAAACAACGTAAGATACTTGACAAAGTCGA 30110 32 90.6 34 .....A......G....T.............. AACTTGGAGACGGTGTATAAATCCGCACCAAGGG 30176 32 90.6 35 .....A......G....T.............. TCTTCATCTATTTCTAGAGATAGAACATTACTTCC 30243 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 62 32 95.9 34 GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Left flank : TTTCATAATGAGATAAATATGTATATACTAGTAACATACGACGTAGCTACTTCCACAAAAAGTGGAGAAAGACGACTGCGAAAAGTAGCTAAAATCTGCCAAGACTATGGACAACGAGTGCAAAACTCTGTCTTTGAATGCTTAGTCACCCCTGCACAAAAGGTACAACTAGAAGCACAATTACTTGACGTAATAGATCAAGAGCACGATTCCCTGCGCTTTTATCACCTAGGCAGTAACTATGCTAGCAAAATTAAAACCCTAGGCAAGCAAAAAAGCTTTGATATCGAAGAAGAGCTGATTATCTAAAGAAAGAGTAAATGAATGATGAGGTGCGAACCTTAAGCAAGTAGCGAATCCCCTAGGTAATCGCACACACTATATTTCAAGGAGTTATAAAAGAAATATCTTTGGGTATTGAGGTGATGTCAGTCTGTAGGAACCCACTCGCGAAACATAGCTTTCAAAGTCATAAATAATCAGTATCTTTGTACTGAACG # Right flank : TAAAAAATCATTCGTCTCAAGTTTGCCTGAACAACCTCTATATCGATAAGCACCGAGGGGTAAGCGAGCGGCGGTCGAGAGTTCTCCGAGTACCCCACGGAGAGTTGCCCTGTATTCATACTCACTTGCCTAAGCGTAGGCACAGCCTCAGTGAGCTTGCTCTTGATGTCTTGATAAACTGTTTTCATTTCAACAACTCCTTTATGTCGTTAATAACTTCCTGCCGTATCTCTTGCGCCATCCGCTTAGACGCTCCCATAAATGGTCGCTTCGGCATGGCAAACTCTTTTTTGCCATAAACCTTAGCCTTAAGTCCATATTGATGCACCCTCGCATATGGGGCGGTATTCCTAACGACAATACCCTCCTTTGTGCGCGCATAGCTAAACGCATTGGAGAGATGCCCCGTTTCTCCAGAAAGGATTTTCGCCGTTGTGCGCGCAAGACTAAAGCGCCCGGTCTGACCGCTATGACCATACCAAGAGCTTTCAGGTTTTCGC # Questionable array : NO Score: 8.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Alternate repeat : GTCGCACCCCACGCGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //