Array 1 11366-9956 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXC01000021.1 Campylobacter fetus subsp. testudinum strain 85-387 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 11365 29 100.0 36 ............................. CAAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 11300 29 100.0 36 ............................. CATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 11235 29 96.6 37 ...............G............. TAGGATAAAAAGCTATACAAGCAAAGCAAGACAACTT 11169 29 96.6 37 ...............G............. TTCCGGGCTTCTGCCATAAAGCTTTTTAATAGCATCT 11103 29 96.6 36 ...............G............. TCTTTTTTGATAGCAATAAAGAAGCTTATAAGCAAG 11038 29 96.6 38 ...............G............. TTTTTAACCTTAAAGTGTCACGCTATTTTATGCAAAAA 10971 29 100.0 37 ............................. CTCTCCATTGTCGATTTCTGGGGTCATGCTCTCTCCG 10905 29 100.0 36 ............................. CAACCTCTCTTTAAGCACCATTCGTTTATTCCGAAC 10840 29 100.0 36 ............................. CACTTTGAAAATAGTGCTATCGATGATTTAAATGGA 10775 29 100.0 36 ............................. CTATTCTATATGAAAACTTTATTAAAAATCCTAAAC 10710 29 100.0 37 ............................. CAGATTTAATACAACTTTTAGCAATATTATTATAAAA 10644 29 100.0 37 ............................. CCCTGTAAAGCCTTGTACAGTTCTAAAGTTGTTGGCA 10578 29 100.0 38 ............................. CAAAAAATCATTTAGCTCTTTATCCGCCGTCTGGCTTT 10511 29 100.0 37 ............................. CTAATTTTATTAGTAAAAATTGTAAAGACAAGTAAGA 10445 29 100.0 37 ............................. CCATTTAAAAATTTATTTTTAAAAGATGTTATCCTTA 10379 29 100.0 36 ............................. CTGTGGTTTTTCCCTATTCTCCAGCCGTTCGCTTCG 10314 29 100.0 37 ............................. CAAATGAAACATTCGCGAAGCTTGATAGCTTTGTAAA 10248 29 96.6 36 .........................T... TACGATTTTCCCTGTGCTTATTAGCACTATGTACTC 10183 29 100.0 37 ............................. CATCACATTTTTAGATATATCAGAACTAGCAGTAATG 10117 29 100.0 36 ............................. CTTGAATTTTCTAAAAATACCTTCCGGCCATTTTTG 10052 29 93.1 39 ......................A..A... TAGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 9984 29 79.3 0 ..........C....AGC....A..A... | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 98.0 37 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : CGGACTTTTTAAATATTTTAAACAAAATGACTG # Right flank : TCATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACCGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3999-5405 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXC01000025.1 Campylobacter fetus subsp. testudinum strain 85-387 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3999 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 4064 30 100.0 36 .............................. TGAAACTTTTAGCGACGATCTTATAATGCAGCACGG 4130 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 4195 30 100.0 35 .............................. AGAGTAAGTGGAGTCTGGTTTAGCAACACAAGAAT 4260 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 4325 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 4390 30 100.0 36 .............................. TTATAGAAATATTGGAGATAAAATGACAATTAAAAT 4456 30 100.0 36 .............................. TTTACTTTCTCTCCAAACTCTTTTAACTTATCACTA 4522 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 4587 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 4652 30 100.0 35 .............................. AAAGATTTACACAATCTTAATTGTGTCCTTGATGA 4717 30 100.0 36 .............................. TAATTACAATCTAGTAAAAAGCGTAGAAATTGTGTT 4783 30 100.0 36 .............................. CCATCGCTAAACGCCCCACCCGCGGTAGTTAGGTGA 4849 30 100.0 35 .............................. ATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 4914 30 100.0 36 .............................. AGCAGATAGCGCAGTAGATAAATTTAAAAATAGCTT 4980 30 100.0 36 .............................. CAGTGATGATACTGTATATACCCTTATAACAAATGG 5046 30 100.0 36 .............................. ATTTATATTTGCTGATTGCCAAAGAGTAAGATACGT 5112 30 96.7 36 ..............C............... AACTATTAAATAGTGATTATATTTTAGTTCAGTTAA 5178 30 96.7 37 ..............C............... TATCTATTTGATCTTGTTTAAAGCTCGCTGCTGCTTG 5245 30 96.7 36 ..............C............... AGTGCACAATGAGATCAGAAGCGACCTTGCAGCAAA 5311 30 96.7 35 ..............C............... CAACTCGGCGCAAGATTGCCAGAGGAGAAAAAAAA 5376 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.2 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : CAGTACGAAGGGGATATTAGCAAGGGAATTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : GTTTCAACACAAATCTTGTCATTAGCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 18-309 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXC01000067.1 Campylobacter fetus subsp. testudinum strain 85-387 contig00069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 18 30 96.7 34 ...............T.............. TTGAAAGTCTTTGAAGTTTTAACGTGTGGTAAAG 82 30 96.7 36 ...............T.............. GTTTATACTGAGAGTGAATATATGCTATATCTACAT 148 30 100.0 36 .............................. CTGTTATCGTATTCTTTTATGATTTTTTCATAGCCG 214 30 100.0 36 .............................. TAGAATTTTATTTTATACTCTCTTCCTTGCAAATCC 280 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 36 GTTTGCTAATGACAAGATTTGTGTTGAAAC # Left flank : TTTTGGCAAAACTTACAG # Right flank : T # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2600-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXC01000032.1 Campylobacter fetus subsp. testudinum strain 85-387 contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2599 30 100.0 36 .............................. TGAGTTATGTGACCTATGGGTTCTCCTTTTATGACT 2533 30 100.0 35 .............................. TTTACTTTTAGAGTTTGTAAAGTAGCGCTCACAGT 2468 30 100.0 37 .............................. TCTTCCCCATTTAGAGGCTTTTGCGTGTTCTCATTTA 2401 30 100.0 36 .............................. AGATCAAAATCTAGCCCGTCTTCTATAGCCCTATAT 2335 30 100.0 37 .............................. GTAATATAAAATGTATATTTTTTAGAAAAAATTACTA 2268 30 100.0 36 .............................. TTATTAGCAACCACTTTAAAAGCCTCTTGCGCTTTT 2202 30 100.0 36 .............................. GCAAAATCTCCATACTTTTTCTAAAATTCGCCATCG 2136 30 96.7 20 ...............G.............. GGTGGTGAAGGTTCTGGTGG Deletion [2087] 2086 30 96.7 35 ...............G.............. ACCTTATAAAGGTGCGCCTAGCGCTATGAAGTCCA 2021 30 100.0 36 .............................. TCGCTAAACGGTAAGGCTACTGTGTATTTTAGGAAT 1955 30 100.0 35 .............................. AAATTTATAGTGACACTAGCACTCCGCTACCGCCT 1890 30 100.0 35 .............................. CATACTTAAAAATCTTATCTCGCAGAGATTTTACT 1825 30 100.0 37 .............................. CACATATTCGTATCTACAATTACGTTATAACTTGCTC 1758 30 100.0 36 .............................. CGGCTTTTAAATAATGCGTTTATTTCGCCCTGCAAG 1692 30 100.0 35 .............................. GTTGCAGCGTACGTGCATTCCGCACCTACTTTAAA 1627 30 96.7 37 ...............G.............. ACGATTATGGCGTCTCTGATGTATCTTCTTATAGGAT 1560 30 100.0 35 .............................. AAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1495 30 100.0 36 .............................. ACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1429 30 80.0 4 ..................A..ATA.C...T TTAA Deletion [1396] 1395 30 100.0 35 .............................. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1330 30 100.0 35 .............................. AATATGAGACAAGAAAAACAAAAGGAGGTTAGATA 1265 30 100.0 36 .............................. TAGGCTCTAAATAATTTAATATATCCATTACGGAGC 1199 30 100.0 35 .............................. AAGCTTAGCTAATGGCTATACATTATATAGTTGGC 1134 30 100.0 36 .............................. TAACTCAAGTTTGCCAAAGTAGCAGAGTATAGACTG 1068 30 100.0 36 .............................. TCTCTATCTCCTTTTTTAATATAGTATAATTATAGT 1002 30 100.0 35 .............................. TCAGCAAACAGAATAAATAAAATCAAAACTTAAAA 937 30 96.7 36 .............................T TAGACGTATAATCTAAAATGAAAATTCCAATCTCTT 871 30 96.7 35 .............................T CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATA 806 30 100.0 36 .............................. ATAAAGCCAAACGTGATATGATGTATAAAATGACTG 740 30 100.0 36 .............................. AATAACTGGTTAAGCAGGGGACTCCCGCAAGAAGTT 674 30 100.0 37 .............................. AAAACAAAATTAAGGAGTAATTTATGTATAAAAAAAT 607 29 80.0 18 ..............G.....-....TCTC. TTATAAGGAATGTTTGAG Deletion [561] 560 30 96.7 37 ...............G.............. GGCGTCTAAAACTACCATAGCAATGGTGATTTTAAAC 493 30 96.7 36 ...............G.............. CCGTCACTCGCATACACGCCTAGCTTATTATTATTT 427 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 360 30 73.3 0 ..........A....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 36 30 97.5 34 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : GCTCGTACGGCACGGCATTTCTAAATTTCATTTG # Right flank : TCACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGCATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAAAATAACCACTCTAAACCATTGTACAAAAGAGTTCCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //