Array 1 180449-180692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000018.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 180449 36 100.0 33 .................................... AAAATCTGGCCAATCTATCGCTACGTAAGCGAT 180518 36 100.0 33 .................................... TATAGTTCTCGAACCACACGGGCGAATTTGGAC 180587 36 100.0 34 .................................... TCCGAATCCTCTTACAGCCTCGCTACCGCGTACT 180657 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 4 36 100.0 34 GTCGGAGAGGCCTCTGGCTCGAGAGGTGACTACGAC # Left flank : TCAGTCAGGGCATCACACAGGCGAAAACGTATCAGGCTGACGCCAATGGTTTTTTTGACTACTCTGTAGAATGGGGAGGAGTTTTGGAGGTATTTGAAGACCGGCTCCTGGAGTAGCGGTAAATGCAAAAGCCCCGGAGTATTAAATCCGAGGCTTTTTGCGGTCCGGACGGGAAAGCCGGAAAACACACCTAAGCCTTTGTCTATCAATTGAAAAGGATTAAATATATGAAGCGTAGTGCAAAGATTGGTGCAAAAAACTGCAAAAAGGGAAACCCATTAATGCGTCAATCACATTGCCCTATTGCACTCAAAATAGTCACATCACGTGGGGATAAAGTTCAATTTTGTAATTTAGAGGCAGGTATCAAACCGGCATACGGTTGAAGTTTTAACCGTTTTTTTGTCCTAGTAGAATACATTATCAAAAGATACATACAAATGCAATTTTTACATCCTGCTGTATACCAATGTCTTTTGAAGAAAAAAAGCACTTCACGG # Right flank : CAGAAAGAGGGCAAGTACAGTTCCATTTGTACTTGCCCTCTTTTTTTGAGTTCAACTAATTGGTACTCTCGCTTCCTGCTTTCTTAACCGTTGCGAAACTATCCCAGATTGGTCGAATCTGGAATTGCGATTTGACCTATTCTGGTATACATCTCCCGTCAAACCTTTCTGAAGACTCAGGACCCGAACCCAAAGTCCCATCTTTCCTTTTCAGAATACCCCGACGATCAAGACAATATTACTGTCCTAGCCACTCCCCAAACCGGGAGCCTATCGGACTTGAGAGCGATTATTACTAGAGCGTACATCAAAAGTGCCCTAGTCACTCCTCAAACCGGGAGCCTATCGGACCAACCACAAGCTGGCCCTCCGTGTGAACCAGGTTAGTCCTAGTCACTCCTCAAACCGGGAGCCTATCGGACCAACCTGTTCGAGTCAGGGTATAGAACTAATTATTGTCCTAGTCACTCCTCAAACCGGGAGCCTATCGGACCAACCTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAGAGGCCTCTGGCTCGAGAGGTGACTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 182054-180935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000018.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 182053 36 100.0 37 .................................... TAATATTCATATACCCGGCTGGATTCCAAGGCTTTAG 181980 36 100.0 38 .................................... ACGAAGTGCAGGTACTTCGGGGCGAAGACTATCAATAT 181906 36 100.0 37 .................................... AACTACATGGGCACAACTCAACGCTGTTGTACTTAGC 181833 36 100.0 36 .................................... CGTCTTTGTTTGCGCTCGGCATCGTCACCTCTTCGA 181761 36 100.0 36 .................................... GGAAGCCGTACCGGATGAGCACTGCCACCAGATTGA 181689 36 100.0 37 .................................... TATTGGGCTCTTTTTTATCGTCGCTTTTAGATGAGGT 181616 36 100.0 35 .................................... GCCAATTCTTTTTGTGTCTTTTTCAATCTTTATTG 181545 36 100.0 38 .................................... AATAAGTTTCACGTGCCAATAGCTAACTCAAAAGGCTG 181471 36 100.0 35 .................................... GGATATGCGCCAGTGCCTTCTCTACCACATCATAA 181400 36 100.0 36 .................................... GCATCCTATCAAAAAACGCTGCGACATATTGAATTC 181328 36 100.0 37 .................................... TCTTTTTCATGTACTGTGCAGCCTTCGCACTCTTTTT 181255 36 100.0 35 .................................... AATAATTAGTTCTATACCCTGACTCGAACAGGTTG 181184 36 100.0 35 .................................... AATAATTAGTTCTATACCCTGACTCGAACAGGTTG 181113 36 100.0 35 .................................... TAACCTGGTTCACACGGAGGGCCAGCTTGTGGTTG 181042 36 97.2 36 ..................................G. ACTTTTGATGTACGCTCTAGTAATAATCGCTCTCAA 180970 36 94.4 0 .....................G......G....... | ========== ====== ====== ====== ==================================== ====================================== ================== 16 36 99.5 36 GTCCGATAGGCTCCCGGTTTGAGGAGTGACTAGGAC # Left flank : ATAAATGCATTGTGACGTGCGATATTCAGAAAGGCCCCAAAGTAGGATGGGTGTCTGTGAAGCGTTCGGCGTTTCGGCGTATTTGTCATTTCAAAAATTTGGTTTGGGTAAAAATTAGACTGTATCCTTACAGCTGCGCAGGTTAGGAAACCGGATACAAGCCACTTTCCGTGCCATACAATGGTAGTCAGGAGGGTGCGGTATTCACTGATAATGTGATTTTGGTAAATATATATTTTTTATGTGCATTTTTAGAAAAATCTCAGGTATTTGATTAATTTTCTCTACTCTGGAGCGAAGGCTTAGAGTTAAACCAGATTGGCAAGTGAGCCATAGGGAAGTTGGCGACAGGCCTCTGTTTTTACCAAGTGAGAATTTTGAAAATTATTCTTAGAATTTAAATTTTTCAGTAATTAATTCTATCGAGTATGGAAAGTGTAAAGTTAAGTATTGGAAGTACTCACTCTTACTACACGATTTTCATATTAGACATTTTACCT # Right flank : AGTAATATTGTCTTGATCGTCGGGGTATTCTGAAAAGGAAAGATGGGACTTTGGGTTCGGGTCCTGAGTCTTCAGAAAGGTTTGACGGGAGATGTATACCAGAATAGGTCAAATCGCAATTCCAGATTCGACCAATCTGGGATAGTTTCGCAACGGTTAAGAAAGCAGGAAGCGAGAGTACCAATTAGTTGAACTCAAAAAAAGAGGGCAAGTACAAATGGAACTGTACTTGCCCTCTTTCTGTCGTAGTCACCTCTCGAGCCAGAGGCCTCTCCGACAGTACGCGGTAGCGAGGCTGTAAGAGGATTCGGAGTCGTAGTCACCTCTCGAGCCAGAGGCCTCTCCGACGTCCAAATTCGCCCGTGTGGTTCGAGAACTATAGTCGTAGTCACCTCTCGAGCCAGAGGCCTCTCCGACATCGCTTACGTAGCGATAGATTGGCCAGATTTTGTCGTAGTCACCTCTCGAGCCAGAGGCCTCTCCGACCCGTGAAGTGCTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGATAGGCTCCCGGTTTGAGGAGTGACTAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 172428-169243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000039.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 172427 30 100.0 36 .............................. TTCCAGCTCGTATCTGGGCACTCCTGATGAGGGCGA 172361 30 100.0 36 .............................. GGTAATCGGCATTAATTTCTCCGACCAGCTCAATCA 172295 30 100.0 35 .............................. TATTATCCAGATAGGTCGAAAGGTCAACACTGCCG 172230 30 100.0 37 .............................. TCGTAAACAAAAAGGAGCTCGGCAGTCAGGTGGAAGC 172163 30 100.0 36 .............................. TGGGCAAAGTTTTTGAGAATGCCCGGCTGAGTGCCA 172097 30 100.0 36 .............................. TAGGCGAAAAGAGCATGAAGGGAGCCATTGCCCTGA 172031 30 100.0 36 .............................. GTATTGGTTCATGGAGGCAATCCAGGCGTTTATCTC 171965 30 100.0 35 .............................. TCATACAGGCAAGTGATGAAGTCCGAAGCAGTAAA 171900 30 100.0 35 .............................. TTGGTCTGGCTGCCCGCTACGTCGTCAGTGGGCGG 171835 30 100.0 35 .............................. CAGCTCCCCCGGCCGTATAAATGTAAAGTACACGA 171770 30 100.0 37 .............................. TTATTCTTTCCAGTTCTTCCAGCCTTACTGCTATCAA 171703 30 100.0 35 .............................. TTAGCATTGTAGATATTGCTCAAATATCCAGAAAG 171638 30 100.0 35 .............................. TCGGTTACATCTTCCGCCGGTTCTTCCACGGTTTC 171573 30 100.0 36 .............................. TGTCCACCTTGTACAGCAGCTCTTTGCCGTCTGCGT 171507 30 100.0 36 .............................. TACACCCTAAAGGAGGGTGGCTCGAGCTTAAAAGCA 171441 30 100.0 34 .............................. TCATATAGCGCATAAGCCGCCGCGCCTGATGGGA 171377 30 100.0 36 .............................. CTGGTTCCCGGTGTCCGATTCCCACCCACTCGCTGC 171311 30 100.0 36 .............................. TGGAAAACCTCGCCCGCCTGTACGGTTGTAATCTCG 171245 30 100.0 35 .............................. CTGAGTATTCCGGCAGGTCCTCCGCCTTAGAGATA 171180 30 100.0 37 .............................. CCGTGAAGTAGCCACCCGCGCCGGTCCAACCCAGCAC 171113 30 100.0 37 .............................. TCATTTGCGAAAGCGGGAAGTAGGGGCGCTCGGGGAG 171046 30 100.0 37 .............................. TAAAATCCAGGCGGCGGCTTTCGCCCGGCCCGATCTC 170979 30 100.0 35 .............................. AGCTTTTGCCGTTCTGCAGGTCGGATTCCACGCGG 170914 30 100.0 36 .............................. TGGACGGTAGACTGTCTACGGCTGGCATTAAAGTAG 170848 30 100.0 36 .............................. TGGTAGATGGCCTTGCGCTGCTCCAGGAAAGCACGT 170782 30 100.0 36 .............................. GTTAAAGATAATGGTAGTAATTACTTCAGGTATTTT 170716 30 100.0 35 .............................. TAGGCAGGCGGAATAACATGCTTTTGCCAGGTGCG 170651 30 100.0 36 .............................. CCGATTACTTTTGTCGCTTTCGGGGTGCCGCTTACT 170585 30 100.0 35 .............................. GGGTTTTGATCATATACTCGACCTCGTTCTTAGCC 170520 30 100.0 35 .............................. CGTCGATTTCATTTTCTAGTAAGTCTATAGCCCCC 170455 30 100.0 35 .............................. TGATCTCTGCCTGCAAAGCCGCCTGCGCTGCTTGT 170390 30 100.0 35 .............................. TCTTTTGTTGCCATAACAACAATACCTTTTCCTTC 170325 30 100.0 37 .............................. TGGTAAGTATGCCCTTGATACGCAAGCTCCCCAGCAC 170258 30 100.0 36 .............................. CGAGAAATGGAGCAGGTTTGCAGATGATAACGAAAG 170192 30 100.0 36 .............................. CTTTGTACAGATAGTGCCCAATCGCATCCTGCCACA 170126 30 100.0 36 .............................. TGTTGAACAGGCGGGCAACATTCAGCATCTCGCCGA 170060 30 100.0 36 .............................. TTGTTGTCCGTGTACTTGCGGTAAGTCATTTTGCCC 169994 30 100.0 35 .............................. TAGCTCTTCGCCCGTGCATTGCGCAATATGCGAGG 169929 30 100.0 36 .............................. TGATAAAGTTGTCATCTAGAAAAAGTGCTATCAACC 169863 30 100.0 35 .............................. GGCTATGAATGTCATTGCAGGGGCTGTAACGGCAG 169798 30 100.0 36 .............................. CTTTTTCGCGCTAGAGGTTGCAAAAAGCCTATCTAA 169732 30 100.0 35 .............................. GTGCAAAACAGGTTTGTCGCTATTGTCAATTACCA 169667 30 100.0 35 .............................. ATAATCCAAAATTTGACAATCACCCTTCGCTTCGG 169602 30 100.0 36 .............................. AAAGTAATAAATCCTACTGATACAAAAGTACCTGTA 169536 30 100.0 36 .............................. AAGGTCCTAACTTTTAAAACTCTATAGTCATGCGTA 169470 30 100.0 36 .............................. ATGTTCCCGCGTAATTCTTTTACGATTAGGCTAAAG 169404 30 100.0 37 .............................. TAAGAATATTAGGCATGGTCAGGGACTGGGCTTTTTC 169337 30 96.7 35 ........................G..... ATATACAGGCGAAGGTTAGTTCCGTTTATTACGCC 169272 30 96.7 0 ........................G..... | ========== ====== ====== ====== ============================== ===================================== ================== 49 30 99.9 36 CGCTTAATCGCACCAGATTGGAATTGAAAC # Left flank : AAGTTCGACCCTATCTTCCAGTTGCCAGCTGAGATAGTCGGCATAAGTGTATTTTTTGGACAGGTCCAATTGATCGATGCTGGTAATCATGCCAATGCTTTTAGTTAAAATACAGAGAAATGGCCAATAGTTCAACTTTATTGTTGTCTGTCGGGGCTGTTAGTGAAGGATTCAGAACACCATCTTCATCAGGGTAGAATCTTCCGGAAGTATCCTTATCTTTAGTGGGTGCCAGACCGACAAACGGGTGACCGGGCTGAAGCAAAAGGAGGTCAGCCGGTGTTTGGAGCGTGCGTCGACCTGCCGGCCGAAAACACAAACGGTATAAAACGCGGACCCATTGAAATACTCAAAATACTGGTCATCAATGTGTTAAGCCAGTCGTCGACCTCGCGGCAAAATCAGCTTACCGGCGGCCGACGAAAAACCGGAGCTAAAAAGGCTCAATGTTCTTTGACAATTGGTTAATCTTTAGTTACTTACACATAGGCTTTACCGGC # Right flank : CGGGTATCACGGAAAACACCGAACACACTGAAAAATCCCTCAATCACACCATATCGGTTTGGGGCATAAAAAAAGCCCTCAGCGTTATGCTGAAGGCTTTCGTTGTGAACCCGCTGGGGCTCGAACCCAGGACCCCTTGATTAAAAGTCAAGTGCTCTAGCCAACTGAGCTACGGGTTCCTAAAATTGGCTATGTTGCGGTGCCTTTTTCGTAAGGCGTTGCAAATATAGGGCAGTTTGGCGGAAAAAACAAAGGAGAAATTTTATTTTTTTCATCCTTTTCGCCCCCCTGCTACACAGACGATTGAAAAACAGGAACTTGGGCAAAATAGTTTCCAATCTGACTTATTTTTTCGGTGGGCGGGCAGCCTGCAGCGCGGCCTCAAAAGTGGCATAACAGGTGTAATCCTGAATAACGGTCTCTGCCCCGATAGCGTGGAGGGTATCCAAATCGCCAAGATGGCGTACGCCAACGAAGTCAATCTGAAGGTTCCGCGTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTTAATCGCACCAGATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 3608-4577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000081.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3608 36 100.0 37 .................................... TGCTTTTTCTTTACCGGGTGAAACTCATTTACTTTTT 3681 36 100.0 36 .................................... TAATATACCTACTGTGTTTAGGAACCGGCCATTTGG 3753 36 100.0 37 .................................... AGAAACTGGTGCTCTCAACATCTTGGGAAGTTATTGA 3826 36 100.0 36 .................................... GTCCATATACGCGTATTCGCCGTTAATAGTGTACCC 3898 36 100.0 38 .................................... CGCTAGTCTATGAATACGTGCCTCTTACTGACCTGATC 3972 36 100.0 36 .................................... CACGTTCAGCGAACGTTGCTTGATTGTAGTATTTTT 4044 36 100.0 36 .................................... CTCAGCTTCTCCTTGTTCTCCTTTTTCTGCTTGTTC 4116 36 100.0 34 .................................... TACACACAGTCATTGCTAGGTTCTTCCTCTATGT 4186 36 100.0 37 .................................... GGACTACGAGCCTTTGTAATGACTTTGAAAGACATGT 4259 36 100.0 36 .................................... TTCATGTGTTGTTCTATCATAATTATATGAGTCTTT 4331 36 100.0 35 .................................... TACATATATATAAGGATATCCATATCTATGTGTAT 4402 36 100.0 34 .................................... CGTGACTGGGATTGGCATGACGAAGACCACATAA 4472 36 100.0 34 .................................... GGGATTTTTACCATTTACGTAGACGACTTGGCTA 4542 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.8 36 CTAGGCGAGCGCATCCAGATAAGTTAGGACTGCGAC # Left flank : AGATCGTCCTGGTCATGATGGTCTGCCTGACGATTGCTTACGTTGCACGCCTCTATTTTACGCATCAGCCAGAGGAAATATGACGAGCTACTTCATCAGTTATGATATCAGTCAGGACCGGCTTCGGGATAAATTGGCAAAACTTTTGCAACAAAAAGGGTGCAGGCGCGTACAAAAATCAGTATTTTTCGTACCCGATTTCTCAGCTAAAGAGCTAAAAGACCTTAGGGTCAGTGTTGGGCAGTGCCTAAAAAGCAATCTTGATCCACAGGACAGCGTTTTATGTATCCCCGTAACCAAGAGCCGGTTAGCTGATCTCGTTTGGGAAGGGCAGTCCGCCGGACTGCAACGTTCTTTGAATGACGACTTACATCTGCTGATTTGATAAAGTGACGGTATGATGAGGCGGTGCCGGCAACCGCCTCATTTAGGCTACTGAAGCGCCATTTTTTCAATTGGCGTATTGAAAAAGAAAAGATTATGTATTACATTTGACACGA # Right flank : TCCCGGTTAAGACGACTTACTAAGGTTCGCCTTTGTGGCTCACCAAGTAAGTCTAAGACCGGGACTAAATCGGCGTTGTTTCTGTCCTGGTTCTGCCGATTTAGCGTAGTATGACAAATTACATTTATACTCGGAACGGAGAGGTTTGGGCGTAATGTACAAACCCGACGCACGAGTTTGCCGGTACGCACAGGTATGCCGACATGAAGTCATGGTTGGTCCCAAACTACTTCGTCGTCGGTATAGTTAATCCAGTTGGAGCGCTCCACAGGTTTCATACAGGAAGCAGAAGTCCCGGTTTTGGTGTAGCCGCTAAGTGTAACGCAGCGCCCAAAGGGGCCTAATGGGTGAGGGGCTTAGTCGGAAAGCATAAAAAGTATTTACTGCATCGAAAGGGCTTAATTCAAATTTCCTCAGCGTAAGGTGTTAGATTGAATCAAAATAATTCAAATAAACTGGTTGTTTTCTGTGGTTTCTATTATCTTACAGGCATGATACGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGGCGAGCGCATCCAGATAAGTTAGGACTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 247319-246103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000084.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 247318 37 100.0 36 ..................................... CAGGTTACTCAGTGCACGAGCCATACGCAATCTCCG 247245 37 100.0 37 ..................................... GAGAGGAATCGGTCAGGCGGGCGTACTTGGCCTTCTG 247171 37 100.0 37 ..................................... TGCCCTGGCCGTTCATAGTGCCAGTAAAATCAGAAAG 247097 37 100.0 36 ..................................... TTTCGGGATTTGGTAGAGCCGATACCGCTTCGAGGT 247024 37 100.0 36 ..................................... AAATCCTCGTCAACAATGGACGAAGAGTTTGGATCC 246951 37 100.0 38 ..................................... AATCCTCCGGACTTGGAGGTCAAGCTGCCGAAGCTCCT 246876 37 100.0 34 ..................................... CTTTACCTTGACGTCTCTGGAGTGCAACCGCACT 246805 37 100.0 37 ..................................... CGATTGTTGGCAACATATGTCGATCATATCCCAACAC 246731 37 100.0 35 ..................................... TCTCTTGGAAAATGCCAATGGTTGCCCTTTACTCT 246659 37 100.0 39 ..................................... TTATTCGCATTCTCTGTATATGTAGAAATATGTGGATGT 246583 37 100.0 38 ..................................... CCGTTCATGGCCCCAGAAAAATCAGAAAGGATTCCCGG 246508 37 100.0 35 ..................................... AGAGCTGCAGTAGAGGAGAGACGGGTCGAACCCTG 246436 37 100.0 37 ..................................... TCGCGCTTGGTCGATAGAATGAACTATTCCAAATGCC 246362 37 100.0 38 ..................................... CGGTTAGTACATACTATTATAAATTTTGTATGTACCTC 246287 37 100.0 38 ..................................... CGCTTAGGGCTTAGTTCCAGAATTTACTTACCATTTCA 246212 37 100.0 36 ..................................... CGTACAAGGACTAGCCTTGGTTATTTCTTCGGTTTA 246139 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 100.0 37 GTCAGAGCACATATCCAGTCCAGAGTAGGATTAAGAT # Left flank : ACGTAGAAATTGGAAGTGGTACCTTCCTGACTAAAGTCCTGTCAATTGTCTGCTCCAATTTCAAGGTAATAATTATCTATTCTGCTTTTCGGTAAGAACGGTTACGTAATTGCTATGAACCAAGCTCAAGGCGAGCTTTGCTGGCATGGTGCTCTGCCCTAAGAATATCGACCTTATTATCATTGTTTTTTGTTTTCTGTTAGGGAGGTCTGACATCAGTTCAGACCTCTTTGACTTTAAGCCAAAGTAGAGGTGGCGATTTTAAGGTAGGAGAGGAGAGGGGCTGTGCAAGGCAATAAAAATATCCATCAACACCGGAACGAATCCGCCTGAATTTACGTATATTGCTTGTATTCCGGCAGGATGTTGTATGTCCTGTTCGGTAATACTCTATTAAGTAAAAGCAGTGGTCTCAAACGAAAAACCCCTGTTAAAAAGTGTTAAAATTTCAAGTTATTTGATATTAACTGTTTGATTTTTAATGAATTATAAGGGTTGCT # Right flank : CCCGGTTCAAGACTTACTAAGGTTCGCCTTTGTGGCTCACCAAGTAAGTCTAAGGCCGGGACTAAATCGGCGCTGTTTCTGTCCTGGGGCAGCCGATTCAGCGTAGTATGATAAATTGTATTTGGTTAATCCAGCTGGAGCGCTCCACCGGTCTCGCAAAGGAAGCGGAAGTCCCGGTTTTAGCGTAGTCGCTAAGTGTAACGCAGCGTACTCAGGGTACGTTTTGGGCACGAAGCTTAACCGGGAAGTAGGATTAAGATCCCGTCCCTGGGCGCTGTAGCCTTGCGAAAGCGCCTTAAGACTTACTAAGGTTCGCCTTTGTGGCTCACCAAGTAAGTCTAAGACCGGAACTAAATCGGCGCAAAGTGATTTTTAGCAGCGCCTTTGTACCGGAAACAGGGTACTTTGCTCCTAAATTCCAGGTTATGCAGACGATTAAGTTCAGGGTCAATAATAGGGACGATGCTTTTTTTCAGGCGTTGCAGAAAGAGGTGTCGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGCACATATCCAGTCCAGAGTAGGATTAAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 48238-49037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000080.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 48238 36 100.0 35 .................................... GTTGGTGCATCTGCAGGTGTGGTTAGTCCCTCAAT 48309 36 100.0 34 .................................... CTTAGCGTTCTAGGGAATTTCCTGCTCACTCCAT 48379 36 100.0 33 .................................... ATCATAAGTCGAAAGTTTTTTGCCTAATACTAA 48448 36 100.0 33 .................................... AAATTTTTAGGCTCGGGTTTTGGGTTGCCCTGA 48517 36 100.0 32 .................................... TACTCTCATGTGTAGTCTAATTTATTAAAAAA 48585 36 100.0 35 .................................... AGTCATTTATGACTGTTTTTAGTTTGAACATTATC 48656 36 100.0 34 .................................... CCGCGCGGACCAATCCAACCGAACTCAGCTTCAA 48726 36 100.0 31 .................................... AAATCACTCAGTCTTGACTTATCTGAGAAAA 48793 36 100.0 34 .................................... TACATTCAATGTTCTCCTGAGCTTCTTGAATATC 48863 36 100.0 34 .................................... AATACTGAAAAACGTTTTCATTCTTTTATAAATT 48933 36 100.0 32 .................................... GCACCGCTGCCGCCGTAAGGGCTTCAAAAAGG 49001 36 97.2 0 ...................................A | C [49033] ========== ====== ====== ====== ==================================== =================================== ================== 12 36 99.8 33 GTCAGAGCGAGCATCCAGAATAGATAGGACTGCGAC # Left flank : TCAGAACTGGAAGAATAATGCTCTCTCCTTTATTAATCTTGTAAAATAGCCTATATTAGTTTACCAACGTTCTTTGAAATACCAAATTCCAATGTCCAAATACCGGACAAAACCATCCACTTTTTGATGACAAAGTGTACGCAAGGAACACCAAAATTGCAAAATTACATTATCACTAACAATAATATTAACATTGCAAAATACTGTTTTACAGACAGCTACACAGATAAAAAACCGCTATGCACTAGAAGTTGAATATAGTAAAAACGGCTATGTTTTAATTTCGGCGCATTTTGGGATAAAGACCTGTTAGTCAGTATTTTGTATAGTTTTGGTGTACTCATTTCCACTAAAAAGCAGCATTTTGTGACAGCTCAAAGACACTAAAAACACTTTATACATTGTTAAAATATGGGCATATTTCTCCGGATTGGTGTTAAAGTGATAATGTTTTGTATATTGGAGGTCAGTTAGTTAAGTGGCTTTTTGAGAAGGGCAGG # Right flank : AGCGCAGCGAAGGCCCGTATGGGCGATCCCGGTTAAGATGTACTATCTGGTTCCAGGCTACTTCAAGTACATCTAAGACCGGGACTAAATCGGCGCTGTTTCTGTCCTAATCCTGCCGATTTAGCTTTACTTTTGAATTGGTTTATAGATAGATGATGTATTTTTGGTCAGATGCCCGCTTACACCGCATCCCTAGATACTGACAAGCGCAGCTTCGTCAGTAAGAAAGGGCATACCGTGGGAAGCGTGAGCTTTTCCGGTAGAGCGCATCCAGAATAGATAGGACTGCGACAGTTAAAGCTACTTCCACGTATCCATACACAGTCAGAGAGCGCATCCAGAATAGATAGGACTGCGACCGAAAGATACATTTGTCAATAAGCAAATAGCGTCAGAGCGAGCATCCAGAATAGATAGGACTGCGACAACGTTGCAACACCTGTGTTCTCTCCAGAAATTGGGTCAGAGCGAGCATCCAGAATAGATAGGACTGCGATTCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGCGAGCATCCAGAATAGATAGGACTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 49292-49671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000080.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 49292 35 85.7 32 TC.G...A.C......................... CAGTTAAAGCTACTTCCACGTATCCATACACA T [49295] 49360 35 94.3 32 .......A.C......................... CCGAAAGATACATTTGTCAATAAGCAAATAGC 49427 35 100.0 36 ................................... CAACGTTGCAACACCTGTGTTCTCTCCAGAAATTGG 49498 35 100.0 33 ................................... TTCCCACTCTCCAAAAGCTTTGTCGCGGTACTT 49566 35 100.0 36 ................................... TACTCTCTCTAAGGAGGTTTTGTGAGGCGGTGCAGG 49637 35 94.3 0 .................................CG | ========== ====== ====== ====== =================================== ==================================== ================== 6 35 95.7 34 GTCAGAGCGAGCATCCAGAATAGATAGGACTGCGA # Left flank : AGTCAGAGCGAGCATCCAGAATAGATAGGACTGCGACTACATTCAATGTTCTCCTGAGCTTCTTGAATATCGTCAGAGCGAGCATCCAGAATAGATAGGACTGCGACAATACTGAAAAACGTTTTCATTCTTTTATAAATTGTCAGAGCGAGCATCCAGAATAGATAGGACTGCGACGCACCGCTGCCGCCGTAAGGGCTTCAAAAAGGGTCAGAGCGAGCATCCAGAATAGATAGGACTGCCGAAGCGCAGCGAAGGCCCGTATGGGCGATCCCGGTTAAGATGTACTATCTGGTTCCAGGCTACTTCAAGTACATCTAAGACCGGGACTAAATCGGCGCTGTTTCTGTCCTAATCCTGCCGATTTAGCTTTACTTTTGAATTGGTTTATAGATAGATGATGTATTTTTGGTCAGATGCCCGCTTACACCGCATCCCTAGATACTGACAAGCGCAGCTTCGTCAGTAAGAAAGGGCATACCGTGGGAAGCGTGAGCTTT # Right flank : GAAGCGCAGCGGAGGCCCGTATGGGCGATCCCGGTTCAAGACTTACTAAGGCTCGCTTTTAGAGCTCACCAAGAAAGTCTAAGACCGGGACTAAATCGGCGTTGTTTCGTCCATGGGGTAGCCGATTTAGCTAAAATTGTATTTTCTTTCTTGATTCAGCTGGAGCGCCTTAAAGGGACTGCATAGGCAGCGGAAGTCCCGGTCTTAGCGTAGTAGCTGAAGTGTAACGAAGCGTCACGTAGCTTCACCGGGAAGAGCGCATCCAGAATAGATAGGATCCCGGTTAAGATTTACTAAGGTTCGCCTTTGGGGCTCACCAAGAAAGTCTAGGGCCGGGACTAAATCGGCGCTATGGCTATGGCTGGGGCAGCCGATTTAGCTTTACTTTTTGTATTGGAGTATAGATGATATATTTTTGGTCAGATGCCTGCTTGCACCGCAAGTAAAGGCATGCCGCGTAAAGCGTGAGCTTTTCCGGTAGAGCGCATCCAGAATAGATA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGCGAGCATCCAGAATAGATAGGACTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 59116-59851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOS01000080.1 Phaeodactylibacter xiamenensis strain KD52 Scaffold1_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 59116 36 100.0 36 .................................... ACTCCTGTCACGTTGGTATAATTTTCCCAACAAAAA 59188 36 100.0 31 .................................... GCCGGCGGCACGAGCGGAGCAACCGTGTCGG 59255 36 100.0 35 .................................... TGGTGTACTTCTGACCTCCATCTCTCCCCATCTTG 59326 36 100.0 37 .................................... GTTTCATCTGTAAAGATTTTATGAATGAAATAAAAAA 59399 36 100.0 33 .................................... CCAAAGGATTCAATTTCCCCGGGAACCATTTCG 59468 36 100.0 34 .................................... GTTTGTGTTGGCCCTACTTCTGATTCCTTGCGTG 59538 36 100.0 33 .................................... GTTGCTGCGTTCCAGAATTTGAATGTCCATTCA 59607 36 100.0 34 .................................... AACTTCTGGATGTTTGCAATTTGATTCATCTTAA 59677 36 97.2 32 ................................T... TCTTTTCCCATATCAATTTTTTTTAGATATGG 59745 36 100.0 35 .................................... ACCTATGTTTTGGTTTTGTTAATGAATTATTGTTA 59816 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.5 34 GTCAGAGAGCGCATCCAGAATAGATAGGACTGCGAC # Left flank : TTAGTCCGTAGGCCAGTCAAAAATGTAAATTGCGAATGCCCTCTAAAAATCCTATATTGTTGAGCCAAGTTCTTTGAAATACCAAATTCCAATGTCCAAATACCGGACAAAACCATCCACTTTTTGATGACAAAGTGTACGCAAGGAACACCAAAATTGCAAAATTACATTATCGCTAACAATAATATTAACATTGCAAAATACTGTTTTACAGACTGCTAAACAGATAAAAAACCGCTATGCACTAGAAGTTGAATATAGTAAAAACGGCTATGTTTTAATTTCGGCGCATTTTGGGATAAAGACCTGTTAGTCAGTGTTTTGTATAGTTTTGGTGTACTCCTTTCCACTAAAAAGCAGCATTTTGTGACAGCCCAGAGACACTAAAAACACTTTATACATTGTTAAAATATGGGCATATTGCTCCGGATTGGTGTTAAAGTTGTAATATTTTGTGTATTGGAGGTCAGCTAGTTAAGTGGCTTTTTGGGAAGGGCAGG # Right flank : TCCCGGTTAAGATGTACTATCTGGTTCCAGGCTACTTCAAGTACATCTAAGACCGGGACTAAATCGGCGCTGTTTCTGTCCTAATCCTGCCGATTTAGCTTTACTTCTTGTATTGGAGTATAGATAGATGATGTATTTTTGGTCAGATGCCCGCTTACACCGTATCCCTAGATGCTGACAAGCGCAGCTTCGTCAGTAAGTAAAGTGATCCCAGACGATGAATGTCTGGGCAGGACCGTGGGAAGCGTGAGCTTTTCCGGTAGAGCGCATCCAGAATAGATAGGACTGCCGAAGCGCATCTAAGGCCCGTATGGGCGATCCCGGTTAAGATGTACTATCTGGTTCCAGGCTACTTCAAGTACATCTAAGACCGGGACTAAATCGGCGCTATTCCTGTCCTAATCCTGCCGATTTAGCTTTACTTCTTGTATTGGAGTATAGATAGATGATGTATTTTTGGTCAGATGCCCGCTTACACCGTATCCCTAGATGCTGACAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGCGCATCCAGAATAGATAGGACTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //