Array 1 288878-289638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMC010000004.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2605 NODE_4_length_486912_cov_56.7602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 288878 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 288939 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 289000 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 289062 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 289123 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 289184 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 289245 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 289306 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 289367 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 289428 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 289489 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 289550 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 289611 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306203-307696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMC010000004.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2605 NODE_4_length_486912_cov_56.7602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306203 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 306264 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 306325 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 306386 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 306447 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 306508 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 306569 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 306630 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 306691 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 306752 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 306813 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 306874 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 306935 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 306996 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 307057 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 307118 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 307179 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 307240 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 307301 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 307362 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 307423 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 307484 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 307545 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 307606 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 307667 29 100.0 0 ............................. | A [307694] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //