Array 1 422254-423746 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLU01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N50438 N50438_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422254 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422315 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422376 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422437 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 422498 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 422559 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422620 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422681 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422742 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 422803 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 422864 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 422925 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 422986 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423047 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423108 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423169 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423231 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423292 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423353 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423414 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423475 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423536 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423597 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423658 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423719 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439869-441650 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHLU01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N50438 N50438_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 439869 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 439930 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 439991 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440052 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440113 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440175 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440236 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440297 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440358 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440419 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440480 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440541 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440602 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440663 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440724 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440785 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440846 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 440907 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 440969 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441072 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441133 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441194 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441255 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441316 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441377 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441438 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441499 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441560 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441621 29 96.6 0 A............................ | A [441647] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //