Array 1 1152345-1151127 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851187.1 [Clostridium] bolteae 90A5 acBRZ-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1152344 33 100.0 33 ................................. TTCCTTGCCTGGACGGTCGTCCCTGGAACCGCG 1152278 33 100.0 33 ................................. AACTACCGCAGCAGCCCAAACCTCCGTGTATTG 1152212 33 100.0 35 ................................. ACTATCTGTCCAATCAAGCAGACACCGGTCATCCA 1152144 33 100.0 33 ................................. CCCTCATAGCTCCCATTGAATAAGGGTCACATT 1152078 33 100.0 34 ................................. CTTGAAATGCTCCAGCGCACGTCCTGCCAGGTCA 1152011 33 100.0 34 ................................. TTGTTCAATTTGATATCTACAGCTGCACGATAGA 1151944 33 100.0 35 ................................. GGTGATATTTCCATTGAGGCCCTGACATACGCTGT 1151876 33 100.0 33 ................................. CGCTGTATCAGTTAGAAGGCAGGCGTACACTGG 1151810 33 100.0 36 ................................. CTTTTTAGGGAAAGTGAGAGGCAAAGGCGCTATATA 1151741 33 100.0 35 ................................. AACAAAACTTGCACTGCAGGCAATGGTGGACCGTG 1151673 33 100.0 34 ................................. AGCGCAGAGGCCGGAAAATCGTGAATGTGGAGTC 1151606 33 100.0 35 ................................. TTCCAATATCTCATTACTTGCTGCCTCGGCCCCCG 1151538 33 100.0 34 ................................. CCTATATTATCTGATGTATCAGGGGATAACAGTA 1151471 33 100.0 33 ................................. TTACCGGATGTCTGGATTCTGGTAAACCGGTAT 1151405 33 100.0 34 ................................. GTCAATGCCGGAACCAATAGGAACCCCGTCACCT 1151338 33 100.0 35 ................................. CGTCACATCGTACGTCTGGCAGAATGCGCCTACCA 1151270 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 1151201 33 84.8 9 .........................C..TTCC. TTCCGGTCA Deletion [1151160] 1151159 32 75.8 0 ............A.A.-..A..CAA.C...... | G [1151130] ========== ====== ====== ====== ================================= ==================================== ================== 19 33 97.9 33 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCACTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGATGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTGGACCATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAGAACGGTTTTGGATGTGTGCAGGGCAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : CCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAATTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTTCCCTCTGAAATGGTGGCC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 674325-676003 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851183.1 [Clostridium] bolteae 90A5 acBRZ-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 674325 33 100.0 34 ................................. ACTTGCGCCTATTAAGTCCAGAATACCGTGTAGC 674392 33 100.0 34 ................................. TCTAATGCTTCTGCGAAATCGTCCGGTCCATATT 674459 33 100.0 35 ................................. ATAAAGCTGTGCCTGGGCGTTCTTTTCGGCCTCTG 674527 33 81.8 4 ...........................NNNNNN NNNN Deletion [674564] 674564 33 100.0 35 ................................. ATAAAGCTGTGCCTGGGCGTTCTTTTCGGCCTCTG 674632 33 100.0 33 ................................. CTATATCCCTGCTTTATTTTGGGCGGCTCCGTC 674698 33 100.0 33 ................................. TCCCCGAACCGGATTACCTGGCTGTTAATCCCG 674764 33 100.0 35 ................................. ACTAAAGGAAATATGTTTAAGGTTGGGTACCATAT 674832 33 100.0 33 ................................. AAATACTCCACTGTGCGGTCCACATCCACGGAA 674898 33 100.0 32 ................................. TCAGTCCGGCACCCGGTTCATATGGCTGCAAA 674963 33 100.0 34 ................................. TCCGTTATTAGGTTATTTGTAGGTGTGTAACCGT 675030 33 100.0 33 ................................. ATTTGTAAGATAATCAACCAAATTTTGCGCAGA 675096 33 100.0 35 ................................. ACCGATAGCAGAGCCAGCCACATCAATATGTATAC 675164 33 100.0 33 ................................. AACGGTCTGTGTGCCAGCAGTTACAAAATCTGC 675230 33 100.0 33 ................................. ATCAGATGCTGCTTATCATTTTAAATCCATCAA 675296 33 100.0 36 ................................. GTCAATGTAATTTATCAATCCTGCTTCCCGCATATC 675365 33 100.0 33 ................................. CATGTTGATTATCAGATTATGAATCAACTGTAT 675431 33 100.0 35 ................................. GCCTATAGCAGAGCCAGCCACGTCCACATGAATAC 675499 33 100.0 33 ................................. ACGAAAACCACAATCATCACAACCGTGAATATA 675565 33 100.0 33 ................................. GTAAGGCCCGTGCTCTATGAGAAAATCAAAGAG 675631 33 100.0 35 ................................. ACCTTCCACCTGCGCATCCTTAAAAGCTGAATGCA 675699 33 100.0 36 ................................. GTAATGTCCTCCCCTAAAAGGGGTAACTGAATCAGC 675768 33 100.0 36 ................................. AACATAAGCATTTACGGCTGCGAGTATGTCTGCCCC 675837 33 100.0 34 ................................. CTATATGTCACGTTATCTCACCTCCGCTCATAGT 675904 33 100.0 34 ................................. GATATATAGTATAACAGACTAAAATGTATAAATC 675971 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 26 33 98.6 33 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : GATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGATCAACAGGGAATCCGTTAAGCGCATACCCCCCTCCGTAAAAAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACTGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAA # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //