Array 1 4319-2891 **** Predicted by CRISPRDetect 2.4 *** >NZ_BARF01000146.1 Streptomyces prunicolor NBRC 13075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4318 28 82.1 33 AC........T.......A...A..... GTGTTCTGCTTCGGCCCAGTCTGCGAGAAGATA C [4310] 4256 28 71.4 33 C..CT........T..AA...A.....C GTTGCGGGCGCCGAGCGCAACGTGGAAGTTGCG 4195 28 78.6 29 ....T....T.A....TA..A....... CAGCGCCCGTTCGCACTCCCGCCAGCCGG 4138 28 89.3 33 ...........A.TA............. TACGCCGCCAGGTGGTGCAGGAGATCGATGTTG 4077 28 92.9 33 ................A......C.... GCGAGGATGTTGCCGCGTTTGGCAAGGTATTCG 4016 28 85.7 33 ....T.......GTA............. TCCTGGCGGCGACCGAGGCTCCAGGATCCCGGG 3955 28 96.4 33 ..A......................... AGGAAGACGGTCTCGGCCGGCAGGCGCAGCTCG 3894 28 96.4 33 .............A.............. AACCCGCCCGCCGCCGTCGCCACCCGCTTGAAG 3833 28 96.4 33 .......................A.... CCTCAGGCCCGGCCCCAGAAAGGCCGGTTCACG 3772 28 96.4 33 ....T....................... ATCGCGAAAGCCCAGCGGGATGTGGCGGACGCG 3711 28 92.9 33 ....T.....A................. TCGTGGAAGAACTCCTGGTGCCCCAGGTAGAAG 3650 28 89.3 33 ..A.T........T.............. CCACGGTGTACTGGGGCATCGGTGGGCAGGTCG 3589 28 92.9 33 ....T..................A.... CGGCCCTTGTCGACGTCGGCGTAGATGAAGCCG 3528 28 100.0 33 ............................ TCCTTGTTGTACGGCAGGGGATAGACCCCGTAG 3467 28 100.0 33 ............................ CGAAGTTGGAGAGCAGCAACTCCAACGGCAACG 3406 28 100.0 33 ............................ TGCCGTGGCCGGGCGGTACGACGCAGGACCTGG 3345 28 100.0 33 ............................ ATCAGGCCTGTACCAGCGCGCGTCGTCGGTGCG 3284 28 100.0 33 ............................ CCTACCGACTGCGCGCCGCCTCCATGCGGTCCG 3223 28 100.0 33 ............................ GCGGGCGCCTCCGACCCGGAGCCGACGCCACCG 3162 28 100.0 33 ............................ ACATAGCGAAGCCCCGCCGTAGCGGGGCTGGGG 3101 28 96.4 33 ...................A........ CCATCCAGGGCAACGCCACGTCCTACAGCCCAG 3040 28 100.0 33 ............................ GAGAAGGAGGGCGAGACCTACACGGTTGAGACG 2979 28 100.0 33 ............................ TAGCTGAGGCGTACAGCGCGATGCTCGAATCGG 2918 28 89.3 0 .A..T......................T | ========== ====== ====== ====== ============================ ================================= ================== 24 28 93.6 33 TGGTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CCCATGGACTCCGCAGCAATGTCCTCGCGCAGTCCCTGAAATGTGGGAGAAAACTTACCCAGATCATGCAGCCCGGACAGAACCGACACCCAGCTCGCAGCATCACCCAGCGGGCCGAACGCGTCTACCAACTCTTGCCGACAGTGAGGCCCCAGCAACACGTCCAGCAGCGTCTCAGCCACGACCGCCGTATCAAGTGCATGGCAAATCAGAGGATGCGGAACAGAACCACCGCCCGCCTTCCCCCAAGGTCCGCAAACGTCCAAGCCACCATCGCTCCCAGAATCAGCCACGCGCCCATCCAAACCGACCAACCGCCCTGGCTACTACGAGTTTTGAACTTCCCGAGACACAGAACCCTCCCTTAACCACAGGTCAAATCCCCTTCCGGACCCACTCCACTAGGCTGACAACGCTTGAGCCCGGCACCGCAAGCTCCTTGACAACACAAAGCAACAACGCCACCCCGGCACGAAAACCAGCGCAAGGCCCGACGGACG # Right flank : TGGTCGTCGATGCTCGATGAGGCCTCCGAGCGGTGGTTCCCGCTGACGCGGGCTTTCCAACGGCGACGGTGACCATGACGAGGATGCCGACGCGGGAGTGTTCCGCGGCGGAAGCTGACCGCGCGGCCGTGTTCGCGGTGGTTACTGTCGATACGGCGGTGAGTGGTCGAAGCCTCAATGCTCTGACCACTCCACCGCTACGTGGGCCGCGAAGTCGGTGTTGAGATCTCATATTCACTCCTCCGGTCCGGCCAGAACAAAGTCGTCCTGGGTCAGCTCCGCCTGGAGCCTTCGCTCGGCGACCTCGGCGTAGTGCGATGACAGCTCGACCCCCACGAACCGTCGGCCCTCGCGCAGGGCGGCGACGCCCGTGGAGCCGCTGCCGGTGAACGGGTCGAGGACGGTGCCGCCCTCGGGGCAGATCTGAACGAGCTGCTGCATCACTTCGACCGGCTTCTGGGTGATGTGCATCCGGTCCTTGCGGGGCTGGGAGGCGATGA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 12447-14531 **** Predicted by CRISPRDetect 2.4 *** >NZ_BARF01000146.1 Streptomyces prunicolor NBRC 13075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12447 28 86.2 32 ..-..............A.......T..A TCCTTGTTGTATGGGATGGGGTAGATGCCGTA 12507 29 89.7 32 ...C................A....A... TCGCCGGGAGGAAGGTGGAAGGTACCGATGGC 12568 29 93.1 20 .......T...................T. CTCGCCAACGCCTTCACGTC Deletion [12617] 12617 29 93.1 32 C..........T................. TCCTGGCAGTACGTCCAGGGCATCATGGACCG 12678 29 100.0 32 ............................. TCCGGCGAGTACACGCGGGACGGGGAGGTGAG 12739 28 86.2 32 .C...-.........A.........A... ACCTTCACCGTGTAGCGGACGAACTGGTTGCT 12799 29 93.1 32 ........A................A... GGGCAGTGCAGGCAGTGCTGGCTTCACGCGTA 12860 29 89.7 32 ......T..................A..A CAGCAGAACGTGCAGTACGACTTGGGCCAGTG 12921 29 93.1 32 ........T................A... TCTCCACAGTCCTCGGTCTGGAACTGGCGGGT 12982 29 96.6 32 ...................A......... ACGTAGTCAACAAGATGCGCGACCAGATGGCC 13043 29 96.6 32 .........................A... GTAAAAACGTCCGGTCGCCGTCCGTGAAGTGC 13104 29 96.6 32 .......T..................... GTGGGCCAGAACAGGAATGGGCCGGCCACGCC 13165 29 93.1 32 .............G...........A... GTGGCCGGAAGACGGACGTCCCGGCTCGTGTT 13226 29 89.7 32 ..................AC.....A... AGTTGCGGTTCGCCGAGGATCTCGCGCATCTG 13287 29 93.1 32 ................T........A... CCGATCGGGCCGAGCGAGCAGTACACGCAGCA 13348 29 93.1 32 ..............T..........A... TCCATCACCGTCACGGCGCCGTCCGGGGCCGC 13409 29 89.7 32 .....T........T..........A... CTGTACGAGGCGGCCGAGTCCCTCGTCGAGGC 13470 28 93.1 32 .................-.......A... CTGTACGTGCTGTTGTGCCAGGCCCTGGAGCG 13530 29 93.1 32 ........T.............A...... GAGGAGGGGGCGCCCTGGCCCGTTGCCCAATG 13591 29 89.7 32 ........A....G...........T... TACGTCAAGGACACTGGCATGCGGAAGCTGAA 13652 29 89.7 32 ......T...........A......A... ATCCCCACCGAGGGGGACGGCCTGGGGGCCCA 13713 29 100.0 32 ............................. CAACTCCCGTTGAGGTAACCGTTGTTGTCAGA 13774 29 100.0 32 ............................. AAGTCGCCGGCGGGGCCGACGTCGACAACGCG 13835 27 89.7 32 .................--......A... TTCTGCGCCATGACCACGGTTGCCGACTCGAT 13894 29 93.1 32 .................C.......A... CAGAACGTCTCGATGCGGACGCAGGGGAACTA 13955 29 89.7 32 .G................A......A... CGGTCGGAGTGGACCGAGCGGGCGAGTCGCCC 14016 29 86.2 32 ...AC..A.................A... AAGGGCACGCCGACCGCCACGCTGAGCACCAG 14077 29 96.6 32 ...........T................. TTCCCAACGGGGCCAGCTACTCGCGCAGATAT 14138 29 96.6 32 .........................A... TGAGCGTGTCCGGGACTGCTGATATCAGCCCC 14199 29 100.0 32 ............................. ATCTCGGGAACCGAGCCCCAGCCCGACCAGCG 14260 29 93.1 32 ......................C..A... GAACGGCGCACGCACTAGGCGATCGGCAAGGC 14321 29 89.7 32 ........T........A.......A... ATCGGGTACTCGCCGAGCCAGCTGGCCCCGGG 14382 29 96.6 32 .C........................... CGTTTCGAGGACATCGAGCGGGCGGTGTTGGA 14443 29 93.1 26 .............C........C...... TTGCCTGCCGGCCGGGGGAACGCGGC CCGA,C [14459,14472] 14503 29 89.7 0 ........T...............CA... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 92.9 32 GTGGTCCCCGCCGACGCGGGGGTGAGCCG # Left flank : TTACCTGCTTCTCCAAAGTCGAACCCGCCCGGATCTGGACAAGCTTCCTTCCGAGTACGGGCACGGAGACAGCAGGCCCCTCACGCCGCTACTGGATGCCCTACGCCCAGGGCTGCCGATCCGCTACCGCATCGATGCCAGCGCCATCCGCAAGCCAAGGAAAACCACCCAAGAATTGTACGGACTCAAACCCATCGTGGCCTTGACGGGTCCAGCCGCAGAAGACTGGTGGCAGAGGCAAGCCGAAAAATCCGGACTGAAGCTGGACAGTGTTCATGCCACGCGGTTGGAGGCGGCCGGCGGCGTAAAAGGCAAGCAACGGATCCATAACCATCGAACGCGATTCGAGGGGAACGCACTCGTCGACGATCCTCATCTGCTACGTCAATGCGTGGAAGAGGGAATAGGGCGCGGTAAGGCATATGGTTGCGGATTGCTCAGTATTGCCCCCGCGAGACCTACTGTGTGACCGGATGATCTTCTTGGATGGAAGTATGCAT # Right flank : GCCGTAGGGCACCTTGTAAGGCAAGTCGTAGGGCGTCCTCTGTGGCGGGCCCGGCACCGGTGTTCCAGCGGGCCGGGCCGGTGGGTTGTCACAGCCAGGTCTGGCCTTCGTCGCGGAAGACGGGCCACGGCCGGTCGGAGGTGTCCGGGGATAGCAACAGGTGCCGGATGCCTGCTGCCCAGCAGTCCTGGTCCATCAGTTCGATGAGGTAGCGGTCCATTTCCGAGGGCCTCACCTGGAGCGTCCGGGACAGCGTGGCGGTGAGTCCGTTGGAGGCACGCCATTCGGCCTGGCTGTGCATCTCCATGACGACCTCGCCGGCCACCAGTTCGCCGGTTCCCGGTGGGCGCACCCATTGCGCCGGGATCCCCCGGGCCGTCAGGTCTGCGGCCAGGGACGGGCCAGAGGTCTCCACTGTGAGGGTCATGACGTCGCCGATCAGACGCGCCGCGGCAACAGGGTGGATGGGGTAGATGCCCCACGGAACGCGCAGCGGGTCG # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCCGACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [25-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16131-20291 **** Predicted by CRISPRDetect 2.4 *** >NZ_BARF01000146.1 Streptomyces prunicolor NBRC 13075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================== ================== 16131 29 100.0 32 ............................. AAGGCGTGCTTCGACTGCGCCCTCGACAACGA 16192 28 93.1 31 ........T........-........... ACCCAGAACGGGCTGCCGTACCAGTGGGCCG 16251 29 79.3 32 .GCAC..A......T.............. AAGGGTGCGAAGGCGCCGTCCGGGTTTAATCT 16312 28 93.1 32 .................-........T.. ACGTCGTACTCCGCCTTCAGTCGCTCTTCCGC 16372 29 93.1 32 ......................C...T.. GTGCACGAAGCGTCGGTGAGTCACGGCTCCTC 16433 29 100.0 32 ............................. CCGTTCGAAGGCTTCTACCACCACGTCATCCG 16494 29 100.0 32 ............................. TCCTACCTCGGTGACACCACACCGGTCCCCCG 16555 29 93.1 32 .........................A..A AAGACGGCGGCCGTACGGAAGGAAGCGCGCAC 16616 29 89.7 32 ...C....T................A... GCCGAGCGCGAGCGGGTGGCGACGGTCTGGAC 16677 29 93.1 32 ......T..................A... TGGGTTGTGGCCGCGATGAGAGAGCCGCCGGG 16738 29 89.7 32 .....A............A......T... CCGTCGCAGTGGTGGGTTATGCCGGCGCCGGG 16799 29 82.8 31 ............AG...A.T.....T... AACAGGGGGTGCTGATCTACGAGTTGGGCTC 16860 27 86.2 32 ...-.......-.............T..A ATGAAATGGAAGCTAGGTCGCCCCGGCGATCC 16919 29 89.7 32 ..CC.G....................... AAGCCGCGGGCCTTGCCCGGCTGGCCGGTGGT 16980 29 93.1 32 ..............G......A....... TCCGGTTCCGGGCACTTCGTACTAGATGGCGT 17041 29 93.1 32 ........T.T.................. TCGAGGCGGACGGTGACGTTCGTACGGGGTGC 17102 29 79.3 32 ...C..T.G.......T....A...A... ACCCCCGTCCTGGGCACCAACGTCGGCTTCTA 17163 29 89.7 32 ..............T...A......A... CGGTAGGTGACGCCGCACTCCCATATCGGGTA 17224 29 93.1 32 ...C.....................T... CACGGGCTGGGCAGGAGCCCAGACGAGATCGA 17285 28 75.9 32 .....-.....T.G..T..A.....A..T ACGCTGAGCACCGACCAGTTGCAGAGCCTGCT 17345 29 82.8 32 ...C.......T......A.A....A... AACGCCCTTAGCTACGTCAAGGGGACTCAGGA 17406 29 79.3 93 ......T.T.......A.A.....TT... GTTGCCCAACTCGTTGGCGAGCAGGCGGACTTGTAGGTTGCGCAGGCGCCAGGGTGTTCTACGGCTGGAGGTCGGTACCATCCGCCACAGGGC 17528 29 86.2 32 .....T..............C.C..A... GCCACCAGTGTGCAACTGGCGAGAGCGGACTC 17589 29 100.0 32 ............................. CACGACGCGAACAGCAAGGTCGAGCGGATCAC 17650 29 100.0 32 ............................. AGCAGGAGGGCGCCGCGCAACGACTTCTCGTC 17711 29 93.1 32 ..............T..........A... TGGGAGATCGGCGGCGTCGAGTGGGACACCGA 17772 29 96.6 32 .........................A... ATCGTCCCGACCGACGACGGCCCCCGCCCGTC 17833 29 96.6 32 .........................A... GAACTGGCCGAGCATCTGCACAACCGGCACGA 17894 29 96.6 32 .............C............... TCTTGCTCGTACCGGATGACGAAGGTGTTCGC 17955 29 96.6 32 .......................C..... TTGGGTGAGGCCGCGCCGCTCCCGCCAGTACG 18016 29 100.0 32 ............................. ATCTGGAGGTTGGTGTACGCCATCACGACTCA GCG [18033] 18080 29 100.0 32 ............................. AACGTCCCTCGCCTCGGCGAGACGTACGTGGC 18141 29 96.6 32 .........................A... ATCGCAGCGGGATCGATCGAGGCCACGCACAT 18202 29 93.1 32 .......T.................A... GAACTTGAGCAGCAGGGCTTCACGGTCAGGCA 18263 29 96.6 32 .........................A... TGGTCATGCATCGGGAAGTTGCCCGGGTTGTG 18324 29 96.6 32 .........................A... GTCCCCGACGTGCCGGTGGATCTTGCCTCCAT 18385 29 89.7 32 .......A........A........A... TGAGCTGTCCCCGCCTGCCGTTACCAGTCAGG 18446 29 89.7 32 .....A.T.................A... ACGGCCAAGCTCGGCAACTGGCTGCTGGACGC 18507 29 86.2 32 .....A.T................GA... TCGAAGTCGGAGGCGATGGCGGTCGTGCAGAC 18568 29 96.6 32 .............T............... ATCCGTCACGCCGAGACCGTGGAGGTCGACGC 18629 29 82.8 150 .....T..............A.CA.T... CCAGTGAGTACGCGGCTATGGTTGTCGCGACGTGATTCGCTGATGTGGGGGTGAACCGGCAGGCATCCACCCGCCGAACCGGACGACGATGTGGTCCCTGCAGACGTGAGGTGATCCCCTTCCACCACAGGGATCTCGGCAGGGAAGGTT 18808 29 86.2 32 ...C.G....T..............A... CCATCCGTCTGATTCTTGGCTGAGCCCCAGAC 18869 28 93.1 32 ................-A........... AAGGAAGAGATCCGCCGCACCCGGGCCTCGGA 18929 29 93.1 32 ...C.T....................... GACTGGGGCGAGATGCTCCGTAAGGCCAGCCT 18990 29 96.6 32 .........................A... TTCACGGTGCCCTCGCCGACGTCGACGCCGAT 19051 29 93.1 32 ..............G..........A... TTGTTCGTCTCCAGGAACTGCGACTCGTTCGG 19112 29 93.1 32 ..C......................A... GCGGACCGGGTCTGGGATGCCTGGAAGGTCGG 19173 29 93.1 32 ...C....T.................... AAGCCCGTCGAGATCGAAGCCGTGCACTTCAC 19234 29 96.6 32 ..............A.............. ATCTGGAGGTTGGTGTACGCCATCACGACTGA G [19251] 19296 29 96.6 32 ..............A.............. AACGTCCCTCGCCTCGGCGAGACGTACGTCGC 19357 29 96.6 32 .................A........... CCGTAGCCAACAGTGATGGGATGGGCACGATG 19418 29 82.8 91 ......T......C.A....A....A... TCGATGTCCGCCTGAGTGTTGAGCGCCGCCTGGTGGTCCCCGCCGACGCAGGGGAGCCGGAGATCTCCAAGAAGCTCGCGGACGTCAACGG 19538 28 86.2 32 .....-T....A.............A... AAGTGCGTCACCGACCGCATCCTGGAGCTGGA 19598 29 89.7 90 A.....T..................T... CCCACGACCGTGGTCAACTGTTCAATCACGCCGTGGTCTTCGCCGACGGGGGGAACCGATGTGGAAGGTCGCGCGTGCCACGACCGCAAA 19717 29 82.8 32 ..T.C.T..................A..A TTGATCAGGACCGAGTCCCGGGTCGCCGTGAC 19778 29 93.1 32 .............G....A.......... AGGGCGGCGAATGCGATGCGGCCTTCGATGCA 19839 29 93.1 32 ..............T..........A... ACGAATCACCGGACGGGTGAGGTGCCTACGAC 19900 29 89.7 32 ........T.......T........A... TTTATGAGGTCCGCGGCCACGAGGTGCGGCCG 19961 29 79.3 32 ........T..T.G......A....T..A AACTGAGCGATGTACCTCAGAAGGTAGCTCGC 20022 29 86.2 31 ...C...G.........A.......A... CTGAAGGGCGCCGTCCTGAACGTGGGAGGTC 20082 27 86.2 32 ...T............-A-.......... ATCGGGCAGGACGGCGAACTGCGCGTGTACAC 20141 29 79.3 32 .....T..A.....TC......C..A... ACCGTGTGCACCGCACGGGGTCCGTCGTAGTC 20202 29 89.7 32 .....T..............A....A... TGGCAGCTAGGGCCGACCTCTTGGTCCAAGCT 20263 29 79.3 0 .....T...........AT....C..G.T | ========== ====== ====== ====== ============================= ====================================================================================================================================================== ================== 64 29 90.9 37 GTGGTCCCCGCCGACGCGGGGGTGAGCCG # Left flank : CAGACGAGCGCGTCACCGACCGAGCGGAACTGCCGCCCCACGCGCTCACACAGCTCGCGCTCAAGGATCCACGTCTCGATGTCGGACCGGTCCAGCCCCGACTGCGGTTCGGGCGCACCGACCTGAGGCGCCTTGCCGTCGCGCATGCGCTTGACCGCCCGGCTGAAGGCGTTGCGGTCGCTCTCCACCGCGCGGATGTGCCGCAGCAGGTCCTGTTGCAGCTCGTAGCCGTCCTGCGGGCTGCGGCAGGTCCGTACGCGCTCGATCAACGGAACCAGGTCCGCCTGTGCGGCTTGCTGCCGCGGATGCACGAGCACCTCTTCGGGCCCAAAGCCCGGATCGAACAGTTTCACCGGCACAGTGTCGTCCCATCGGGTCCCGCAACGAGACAGCTTTTCCCGCTCCGACCCGGCGCTTCAGCTGGCCGGTTGGGCGGGCTGGCGCCCGTAGCGGAGTGCGAGGTCGAAGTAGCCGCGGGCAACCAACGAGACTTCCCGGCC # Right flank : TGCGAATGCCCGTCGGATCAGGGGACCTGCCTTCTCCAACTCGGCAGCCGAGGAGATGCGTACCTCCACGTCGCCTGTCCCGTGGTGCCCGATGCCACGCATGTCGCGTGAGAAGCCCTCCTCCAGCGAGATCGTGTCCGGGGCGATCCGGAGATAGACCAAGATCAGCTCGCGCTTCGGACGGAAGACCACCGAGGCGAGGTTCACCATCCGCCGGTAGGCGATGTAGTGCCTGAGCGCAGCCACCTCGACCTCGCCCCAAGCCGTCAGCATCTCGTCCAACTCTCCGTACAGGTCTTGCAGGCAAGCAGGGGGCGCGCTCGGGTTCGCCTGGACCGACGGCTTCCCGCAGACGCCGCCGCTACCGGCTGCCTCCATCCGCTCCCGGCGCTGCCGCCGGGTCGGAGCGGGCCGGGGAGAACCAGGTACGGACTCGATCAACAACAGGCTCAGCAGCCCGCCGTCGAAGGAGCGATACCGCACCAGGTCGATCCGCTCGT # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCCGACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //