Array 1 283494-283338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIV010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-036 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 283493 26 100.0 39 .......................... ATTATTGTTGTAGACTGTGACACCTTTTGTTTTGTCTCG 283428 26 100.0 39 .......................... TCCTCAATAATTTGGATAAGTAGCTCCGCATAGGTCTCG 283363 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================= ================== 3 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAACTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTGAGATGAGGCAAGGCGTCTTGACTTAACCCAAAGAAGAGCTCCGCTTTCTTCTCCTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1290988-1291947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIV010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-036 tig00000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1290988 36 100.0 30 .................................... TATATGGGCTGATTATTTATATAAGGGCCA 1291054 36 100.0 30 .................................... CACAGCGCTTGTCGATCAGGCCGAAATTTA 1291120 36 100.0 30 .................................... CGGCGACGGAACCGAAGAAACAACAGTGGT 1291186 36 100.0 30 .................................... TAGATTTTGATGTAAGTATCTTCTGCTGGC 1291252 36 100.0 30 .................................... AAACTTAATAGTATCGAGAATATGCGATCA 1291318 36 100.0 30 .................................... CCAGATAGCTCTGAATATACCACGAATTGC 1291384 36 100.0 30 .................................... CCACGAATGCTTTAGCCGAAAAATATGCTC 1291450 36 100.0 30 .................................... TAACTGTTGCGATTGGTGTCATGAAGTTGT 1291516 36 100.0 30 .................................... GCACCTTTAGCCAACCTGAACCACCAGTTC 1291582 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 1291648 36 100.0 30 .................................... TCGTTTCACATTCAAGTAAGTGTGCCCGAT 1291714 36 97.2 30 ..................T................. GGTTACTTGTTAGGGTGAGTGGATAGATCT 1291780 36 97.2 30 ..................T................. GCAACTATTGTTTATTATTTAGTAATCCAT 1291846 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 1291912 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.5 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGAGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAAAGGGGGTTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGATAAGATACGCTTGGTGTGGTAGTTGTTGAGGAACTTCCCCTTACTTTTATCTCCTTATCTTACTATTTGCAGAAAAGTATTATAGAACGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAATGTTACGCAGCTTAACTAACTTTTTGATTGTGGCCCTGCGCTTGCCATTTTCTACCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGTTATGCTGTTTTGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //