Array 1 9400-8516 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000012.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9399 29 100.0 32 ............................. CACGGGCATCCCCTTTCAGGCACCGCCAGCAC 9338 29 100.0 32 ............................. TTATCGACTTGCCTAGTGTCCACTACTTGAAG 9277 29 100.0 32 ............................. CGCGTACCCGTCCGGCGTGCCGCTAGTTTTGG 9216 29 100.0 32 ............................. GAGAGCCTAGACGGGTTCGACCCCTTTAGTAA 9155 29 100.0 32 ............................. TGGGGCACCTTAAGGGGATGCCCTTTTTTAGT 9094 29 93.1 32 .............A..............T AGTGCTCGGTGGCGTAGACCACGGCCCCCTGG 9033 29 100.0 32 ............................. AGCTATTCAAGACCAAGTACAAGCGAGTCGGG 8972 29 100.0 32 ............................. CAAATCCAAAAGGTTAGGGAGCTACGTGGCCT 8911 29 100.0 32 ............................. TAGCGTGACAAAATAGGGAGTGACAAAAATTG 8850 29 100.0 32 ............................. GCTCACCCGGCCCGTTTCCGTGAACGTTTTGT 8789 29 100.0 33 ............................. ATGACGTTCACGACGGGTTGGTCGCGTTTCACG 8727 29 100.0 32 ............................. ATTTAACACCGTTTTGATTGTCATATCTATAA 8666 29 96.6 32 ............................T TACGCTGTCTTACATTAACCCTCGTTACCTCA 8605 29 100.0 32 ............................. GTGCCTAAATCCTTTTCTTCCATGCTTGTCTT 8544 29 82.8 0 .......T..........A..A.A....T | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : TTATTCTCGGCTTTTTCGTTGCCTTCCTGCCGCGGTTTATCCCGCTGATGCTGTTTACCAAGCGAGAAATTCCGGAGTGGTTTAACGAATGGATGAAGTTTGTCCCCGTGTCGCTTTTCACGGCTCTGGTGGTCAAAGATGTGTTTATTGATAGTAAGAGTTACCAGCTGATGTTCACGCAGGTGCCAGAAATGTTGGCCGCGGTGATCGTCATCATCATCGCGTATCGGACGCGTTCGATGGCAATTTCTGTGATTACGGGACTGATTGGCGTGTTCCTGCTGTCGATGGTAATCTGAATAAAATAAATCTAGTAAATCGTTAAATGGTGGGGCCACCCAAGAAGGGTGACCCTGTTTTTTTATAAAAATATTAGTTAATAGGATGTATCTAATTATTGTTGAGTGAAAGCCTCTTAATAGGTATAATAAGAAAAACAAGTTAATGTAAAACGGTAATTAGTGAGATTAAGAATGCTGATCTGTCGGGATTTGTTTAGT # Right flank : TCGAGGGGGTAGTTATCACGATTGCACTAGCCGAGATCATCATCGGTCTATGCCTGCTGTACATGGCGTTTTCCGTACTGACCGGTCACTAAAAAGACTCACCCACTACGCTGATCAGACGTAGTGGGTGAGCCTTTTTATGGCGTTACGGTCCGCGGCCGCAACCATTGAAGCAAGTTAGTCAGTTACTTTATCCGTTTCAGCGTACATGTAGTCTCGCGTCATCGGTAACATCCGGGCAGAAGGGCCCTTGGAAATCAAGTATTGAATCACATCGATGTTCCCAGACTTGAAGGATGCCGCGCAGGCCTGTAAGTACAGGTCCCACATGCGGACAAACTTGTCGTCGAACATCTTAGTGACTTCTTCACGGTGTTGGTTGAAGTTTTGATCCCAAATTTCCACCGTCTTTTGGTAGTGGCGGCGCAGGGGTTCCATGTCATCGATTTGTAAGCCGTTTTCGATGATGTGGGTCGTGTTTTCCACCAGGCCAGGTACAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 145219-146650 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000003.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145219 29 100.0 32 ............................. GCCTTGCTCGATTTCGTCATTCACTCATATCA 145280 29 96.6 32 ............................C TTTAAATTGGTAAGGATTCAAATTCTGGGTAC 145341 29 100.0 32 ............................. TACGTGACGACCAGCCTTTCGACGACGGGTAA 145402 29 96.6 32 ............................C GTCATCAAAGGGTATCAAGGTAAGCATTGCGA 145463 29 100.0 32 ............................. ATCGATAGTGGGAAGTTAACTATTAATTGGTA 145524 29 96.6 32 ............................C TGAAGGAAATTTAAAACCCACATTCTATAGGC 145585 29 100.0 32 ............................. GGATACATTAATCGGCTGCGGTTGCCAGAAAA 145646 29 96.6 32 ............................C GCCTAGACCCAGCCAGCAGCTAACTGACCGGG 145707 29 100.0 32 ............................. CACGGAGGACAAGCACGGTAAAATTACCACGG 145768 29 96.6 32 ............................C TCGGTGTTGTACTGGGCGTTAAAGGAGTTATC 145829 29 100.0 32 ............................. TACAGCGGTTAACTTGCCAAGTGGTGTAACCA 145890 29 100.0 32 ............................. CATGAGCGAAGCGGACAAGGCCGCTGCCTTAA 145951 29 96.6 32 ............................C TTACCCTTGTAGCTCAGCTCACGCTTGAATTC 146012 29 100.0 32 ............................. ACGGGGCACGACGTCATCGACGTTGACCCGGA 146073 29 96.6 32 ............................C TTGATGAGACTAACGACCTGGATTTCAACCCG 146134 29 96.6 32 ............................C TAGCTCGCCTTGATGGGGATGAACTGGTGACA 146195 29 100.0 32 ............................. GGCAACGGTGATTTTAAGGGGTTTGTTACGGG 146256 29 100.0 32 ............................. AAAATCATAGATGGATCGTTCTACTGTCAACA 146317 29 100.0 32 ............................. CTCCGTCAATCACCCCGGCGTTAAATTGAACA 146378 29 100.0 32 ............................. AACAACATCAAGATTGAGAACGGTGGAGACAG 146439 29 96.6 32 ............................C AAGGGGACACAATCATTACAATTACTGATAAG 146500 29 96.6 32 ............................C GTTGATTTAACGGGATTCTTCTTTTTTTAAAA 146561 29 96.6 32 ............................C TCCCTTTCCACGGTCTGCGCATCGAGATCCTG 146622 29 75.9 0 ....................CA.A.AAAA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.4 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : AACGCCGCGTACTGGCTGCACTCCGAAGATACGGACCGGCTTCATGCCGAAAGCAATCTGATTGAGCGTCAGACGGCTAAGGCGGCCATCAAGACGTTGTCGCAGTATCTGTCACGAACGGACGTGGACGAAACGCAGTTCGATAACCAGGCGATTTACCACCTGATTGTGCATTACCGCAACCGGATTGAGCGCGCCAAGGCGGCCGCGGCACCGTCACACGAAGAAGAGTACCAACACCAATTTAACAAGTTACGGGTTCGGGCATTAAGTGCCGAACGGGCCGGGATTCAAAACTTGTTAGAAGCGGGTAACATTTCCTGGGCCATGGCATCGCGCCTGCGGCAATACGTGAACTACGCGGAAAACGTGTTGGTCATGTCGTTGAGCAGTGAAGATGACGGGGACTAAGGAATACTAGTGCCTCTGACTTAAGTCAAGTTCATGTAAAAACGAAATTTATGAAATTCTAAATGCTGCTAGACCGGGATTTGTTTAGT # Right flank : ATAGCAGCACAAAAGCGGCCGCCAGTGGAGTTTTCCACTGACGGCCGCTTGGTATTTATTGGTTAATAACTAGGTTTTTGAGCCGTCATAATCAGATGCAAAATCCAGTAACAGAAGAGCTGGATAAACGTCATCAAAATCACAAATATCCATAAATCATTAGTCCACATGTTCATTAAGGGCCTGATGAATTGCTCCGGATTTAAGAATAAATAGATGGTATGGATCCGGAGGAAGCGCCCGATGTAAACCCCGACCGACGATAGGAAGGTCAACGTTAAAACGACAATTAATCGGACGATGTTATTGCCTCGAGCCAGTCGTTCCGAGATACTTTGACTGACGAAGTTGAGGCTCCAGAACCCCAGAAATGCACAGAATAGGGCGCTGGTGATCAGGTAAGTGAAGTAGATCCAGATGTGGGGCGTCACCCGCAATAGACCACTGACCGCGTAAGGCTGAAGCAGTGACAGGTGAAAGAGGTCGGTCAGTAGGTAGGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77388-79067 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000001.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 77388 29 100.0 32 ............................. CAGTCGACGGGCTGGCGGATCTAAATCCTTCA 77449 29 96.6 32 ............................T TAGGTGACACGGCTATTGATACGGACGTTGAA 77510 29 100.0 32 ............................. CATGAAATATCTAATCAAGCCGCCCCAAGGTA 77571 29 96.6 32 ............................T CACCCATCCGTCTAGCTTCGGTCTTGCCGTCT 77632 29 96.6 32 ............................T GCACGTCGGATTATACGGACCGAATCGGCCCG 77693 29 96.6 34 ............................T TGTACGTGAAGTACGGGATTCCGTTTGGCGAGTA 77756 29 100.0 32 ............................. ATCACCATCAATCTTAAGGGGGTCTGATTATG 77817 29 100.0 32 ............................. CAGCCGCACTCTTTGAAAGACGACCATATAAA 77878 29 100.0 32 ............................. AGAAACGCCTAGTGTTTTTGCAACTTGCGTTA 77939 29 100.0 32 ............................. ATTATTTAGTACCTCCGTTCATAGATGCGATT 78000 29 100.0 32 ............................. AAAGTTCTGCTCATTATCGCTTAAACGGTTAA 78061 29 96.6 32 ............................T CAGGTTAGCCTTCCGGCCGCCAAGCCATTGGC 78122 29 96.6 32 ............................T AACACTGACTATGCCATGAAGATAGCTTGGTT 78183 29 96.6 32 ............................T GATTTGCCACGTTATCATATTAAAATTGATGG 78244 29 100.0 32 ............................. GACGAAAGCGACGGGCGCCCCCGCCGCTTTTT 78305 29 96.6 32 ............................T ACTTCAACGAAATCAATTTTTAGTGTTGATGT 78366 29 100.0 32 ............................. ATTAAACCCATGAAATGCAAGAAAACAAGCCG 78427 29 96.6 32 ............................A CTTATCGCCCAACACTTGGCTGGGGGCGATTA 78488 29 96.6 32 ............................T TAGATTAGTCTATAAAATCCAGTTGACTCTTA 78549 29 100.0 32 ............................. CACCTTCGGGCTGATCGTAAGACCGACTCGAT 78610 29 100.0 32 ............................. TCACGGTCGGCGGAGTCCATCCGAATTAAAAT 78671 29 100.0 32 ............................. GATACCGGTCATCAGGTCCATCATCACCGCCC 78732 29 96.6 32 ............................T AAAGGGTTAGGCATTAACTGTCTGGCCCTTTT 78793 29 96.6 32 ............................T AAACGTTGACAAGCCTTTAAATAGTATGGTAT 78854 29 100.0 32 ............................. GTGGGCGCCCTCAAGTCCGTAGGTGGTCGTTC 78915 29 100.0 32 ............................. GAAATGTCGCTGGCCAACGAGACGGCTTTTAA 78976 29 96.6 32 ............T................ TACGCCCAATCCGAGATGGCAACTAACTATTT 79037 29 79.3 0 .....T..............A....ACTT | TG [79049] ========== ====== ====== ====== ============================= ================================== ================== 28 29 97.7 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : GTGCAGGACCAAATTATGTCGATTGGTGCGGTAAAACGCAACGCCAACGGTCAGGTGGAATCATTTCAACGGCTGATTCAAATTGAGGGGACGGTCCCGTCAAAGATTACGGCACTGACCGGGATAACAACTGAACAGTTACAGACTCAAGGCGTGGACTTGGCTACGGCATTGAAAGACTTGCGCGAGTTCGTTCAGGACCTGACAATTGTTGGATATAATGTCGGCTTTGACGAAAAGTTCTTAAACGTTGGCTATCAATTTGTTGAACAACCAAATTTGACGAATACTTTTCGTGATTTAATGCCAACGGTTAAAAATGCTCAGGAATTTTTAGATAATTACCGATTAGCGACAGTTCTAGAAAAGTATAAAATTCAGAACGCTGATCCGCATCACGCACTAGCTGACGCTCAGGCAACCCTGGCTTTAGCGGACAAGTTAATAAAAAACGGTGATTTCCGAATTTAGGAATGCCGATTTAACGGGATTTGTTTAGT # Right flank : TTTACAAAAGAGAATAATTCCTATGCTACTAGGATTGGTTGAGGTTATCATGATTTATACTGATTTCCGAACTTGCTATTGTAGAGCCCTGTATGTGAGTAGAGAAAATTAACATTCTCGATGGATCAAACTAAGCATAAAAATGACTGCCAGTCTTCAAACTAGCAGTCATTATGAGTCAAAATTAATCAGCCGAACCAATCAGCTGTCCCCGAACCACATCGTCCCGTTGTTCGTAGGCTAATTGTTGTGCCGGCGTTCGCGGTTGATGCTCATCGACAGGCGTTAGTGTAATCGTCGAGACCTGTGAACGGCTATTGCGTAATGGCGCTAAGGCTTTCAGGCCGCCATTCGCTTGTGGAATTAGCGTGTAGTGCCGGTCCCGGAGTGCCGCAAAGTAGGTCTCGTAATTTGGGGCTTCCAAGTATTGGGGGGCTAGGTGGATCACTTCTCCTGTGGCGTGTTCGACAAAAGAGGGGTCAATCCAAACCGCTGGTGTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139523-140614 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000001.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 139523 36 100.0 30 .................................... AAGACGTCAAGCGGTCTTTGATCGGTGCTA 139589 36 100.0 30 .................................... CGCATGGCCGAGAAGTACGACGTCTTCATC 139655 36 100.0 30 .................................... CAAAATAGGGAACTCTTTTATCGCCTGACT 139721 36 100.0 30 .................................... CGACGGTGTTACCGGCATCATCTCTGTTGA 139787 36 100.0 30 .................................... TGTCGGTATACTTCCCAGCGGGTTCATAAG 139853 36 100.0 30 .................................... CAAACACTACCATCAGACCGCAACTTGATA 139919 36 100.0 30 .................................... CCCATAATTAGAGTTATCGTCCGCAATCTG 139985 36 100.0 30 .................................... TAATTGTTGGTTTAAATAGGCCGTTACCAA 140051 36 100.0 30 .................................... ACCAAGGGTGCCCAGGGCAAACTGACTAGC 140117 36 100.0 30 .................................... TGAGTACCATCATGTAGTGCTGAACTTGTA 140183 36 100.0 30 .................................... CGCGTACCAAATAGGCCATTTCAGCATACC 140249 36 100.0 30 .................................... GTATCCTATTACAAGGCTAGCGCCTAGTCA 140315 36 100.0 30 .................................... CACCGTGCGCCATAAAAGCGTTGTGTGCGG 140381 36 100.0 30 .................................... GCTAAGCGGCGAAAGATTAAGCAAGATATC 140447 36 100.0 30 .................................... CAGTCTACTCTCGAAAAGTCGAGTACCTTG 140513 36 100.0 30 .................................... CAATATTCCCTGATTGATTTATTCCAGGAT 140579 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GCTTTAAGTTCCTTTCAAATTAGGGTATAAATTAAG # Left flank : CATGGCCGATGCCGATCGGTTCAAGGTTTTTAAGTAACTTAAAGTCGTTTAAAAGGAGCGCCACCTGCACGAAAACGTGAAGGTGGCGCTCCTTTTTGACTGGGGTCAATATTTCTGATCGTAGTCCCAGATGCCGTTACAGATGGCTAAAAACTGTTTTTGGGTCAACTGGGGTTGGCTCTTCTTAATGGTGCTCAGCGCCGACAACATCAGCGCACTCACGGTGCGGCCCTCATCGAGGGTGGACGCTAACTGAACGTTACCGTCGTCATCGGCTGTCACGGTGATCGAATACTTGGCGGAATCGGCTTGGGTCATGGTTAGACACTTCCTTTTAAGGTGATTTGGATTTACTTTTAGTCTAACACGTTGAGGAGAGAGGATATGGTGAATTCTCTGTAAGAAATTATTCGAAAGCAAGTTATTTTATCAAGAGCATTTAATGCTAACATAAAGGGGTATAAATTAAGCGGAGTCGCCTTATTGACTCACCTACGCCA # Right flank : GACGATATGGTATGAATGCTGTAATCATGGGGGATAGGTCAGGTTTTCCTGACTATAATTCTGCCGATTAAGCTTAATTTATAAGAAAAAAATCTCCCTTGGCATAATATCTGCCGTGGGAGATTTTTTTCTTATAGGACTGTTAAATTAGAATTATCAACAACGGCTTCTTGCGGCGTAATGGGTCCCAGCATGATATGCATGCTGCTGAATTGCTTTTCGGTTAGGACGAGTAAGCGAACTTGTCCGCTAGGTGGTAAACAGTCATTAACACGTTGTTCGTACTTTTTTGCCATGTCAGTCCCATTAACGAGTCGATAATAGACCGAAAATTGCATCATTACAAAACCTGCATTAATTAAATCTTTTCGGAAGCGAGCAGCGTTTCGCCGATTTTGTTTTGTGATGGTAGGTAAATCGAACATTACTAGAATTCTCATAAAGCGTTTATTCTCCATTATCATGTACCTTTAAGTTTTGAACAATTGGGAGTGCCAAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAAGTTCCTTTCAAATTAGGGTATAAATTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 370980-369913 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000001.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370979 29 96.6 32 ............................C GGATCCAGGCTCCCGGATATCGGACAGTTGTG 370918 29 100.0 32 ............................. AACTAGATTGATGGGGGCTGTCAACAGTGATG 370857 29 96.6 32 ............................C CAGGCACTAGCTGGGACGACCAAGTTGGACTT 370796 29 100.0 32 ............................. CATAACTCGGAGCCGTGTTAGCACCATCTAGA 370735 29 96.6 32 ............................C ACAATTCCTATGCTTAAGGAATGGCCTTTTAA 370674 29 96.6 32 ............................C CAGTCCAGCTGAGATTGTGGCGGCTATCAAGG 370613 29 96.6 32 ............................C GATTATCCGACGGGTTGCTAGCGATGCTGGAA 370552 29 100.0 32 ............................. TTGTGTTGAAAATTTCGTCCCAGTTTGTTTGT 370491 29 100.0 32 ............................. TTTTGAGCGCCTCAACAATTTGGTTAAAATCA 370430 29 100.0 32 ............................. ACTCCCAAGTGCTTTCGGGGTCGTCGATGGTG 370369 29 100.0 32 ............................. CACCAGTATATCCGCTTAAAGAAATGAGCTTT 370308 29 100.0 32 ............................. GCGACCTTTCACAGCGTACTTTTTGGGGATGT 370247 29 100.0 32 ............................. AATCTTTATCTTTTATAAGATTGTCCCCATTT 370186 29 100.0 32 ............................. AACACTTGTTTTACTTTTTCCTTTGCTTCGTT 370125 29 96.6 32 ............................C TATCACGCCAATTTCGGGTATAGCTGGAACCG 370064 29 96.6 32 ............................C ATTACCGGTTCACCGGAAACCGATACATATGA 370003 29 96.6 32 ............................C TGGTTTTGTGCGGATTTTTCCCCCTGCTGTGC 369942 29 96.6 0 .........................A... | C [369916] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.3 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : AACTTTGAAATTCCGATTCAGGCGGCCATTGGGGCGAAGATTATCGCACGGACAACCATCAAGGCCTACCGGAAGGACGTCACGGCGCACCTGTATGGTGGGGACCGGACGCGGCGGATGAAGTTGCTGGAGAAGCAAAAAGCCGGGAAGAAACGGATGAAGGCCGTGGGTCGCGTGGATATTCCACAAGAAGCGTTCATGGCCGTTCTTAAAACTGATGAGGACGAAACCAAGTCATAGATATAATGGAGAAAGACTCTGTTTTAGCTGGTTAAGTATATCAGCGGGAACAGGGCCTTTTTTGTAAAAGTTTGACATGAAATCTATTTAACATAACAAAAATTATATTAAGTTAAGCTTGAATTTGCTCAGAATAACCTTCAGGCTTGCAAGCGTCAGGCGAGCTTAGTAAACTGTATTAAAAGCGTGGCCTTGATCAAGTTCATGTAAAACCGAGAATTGTGAATTTTGAAATGCCGGTATAATGGGATTTCTTTAGT # Right flank : AATTATTGTTATTAGCATCCTGTTAGACGTAGGTGGTTGCAGATAATTGAGTGACTAAACCCTCAAGACAGGTTGAAGGTCTAACCATAGCCGACTTTAACCAAGCCCGTTATAATGATTCTAATGTAACAGCGAGCTCAGATTAGGGGGGAGATCTTATGTTAGGGTACGTTCTAGGTCGCGATGGGGATATTCACGACTTTATTGAAACACTAAAACGGGTGCATGGTGAGTTAGATTACGATGAGATTCAATTAGTGCGAGAGCTCATCGAGTTAGCAACTCATCCCGGATATACGATTAACATGGCCAAAAAACTCAATCTAACCTCCGTTGAATTGAGTGACTACCTGCAACATCTCCGGGTCTGTGGGTTAATTGATTATTGGTCCGATAGCGAAAAAACTTCTAAAACGTTAAGTCTGTTATCTGAATAGAAAAAGGCCGCCGTTCACGCGAACGGCGGCCTTCATGGTCTCAATGTCTATGAATTTCTAGCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70687-69010 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000009.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70686 29 100.0 32 ............................. ACGGTGAGAAGCTTTCATTTGGTAATCTGCTG 70625 29 100.0 32 ............................. CATCTCCTCAATGTTTCTATTATACCACAATA 70564 29 100.0 32 ............................. TGTTCGCCGTGACAGTTGCCCCCTAGGCTTTT 70503 29 96.6 32 ............................T GACTTCCCAATTGCGCGGGTTCTCCTCGTCGT 70442 29 100.0 32 ............................. TTGCACCGACTGAGCTTGCGGCTGATTTTATA 70381 29 100.0 32 ............................. TATGAACGAGTTGCCAAGGCATTCAAGGCACT 70320 29 100.0 32 ............................. GACATTGGCCCGTTAATTCAGCGCCTTAACCG 70259 29 96.6 32 ............................T CAGGCGTATTCTATTAGTATCGAGACAAGTAA 70198 29 96.6 32 C............................ GTCAACGGCAACTATCTAAACGCCCTCACGAT 70137 29 100.0 32 ............................. TATGGGCGGCTGGCGAAGGCCTGGTCTACGAG 70076 29 100.0 32 ............................. AATCCTAAAATGATTACCACTACGAATAATCT 70015 29 96.6 32 ............................T TGTGGTCGGCACGGCTATATCTATAGTTTAAT 69954 29 100.0 32 ............................. AAAGATGTCGCCGGGTACATTGTGGCTACAGC 69893 29 96.6 32 ............................T CAAGGAATTAACCGAGCTTAACTTTGAGGGGT 69832 29 96.6 32 ............................T AAGTTTGAAAACGTTTGGAACTTTTCCAAAAA 69771 29 100.0 32 ............................. AGGTTATGGATAATTTTACCCCGGACGAGTTT 69710 29 96.6 32 ............................T GGTAATAAACTGTGGCAAACAGAGGGTGGTGA 69649 29 96.6 32 ............................T ACGGCCCTTAGAAGCGAACTGAGCTGGATTAG 69588 29 100.0 32 ............................. TTCAAAAATATCAGCTAATTTGGAAAGTTCAT 69527 29 100.0 32 ............................. TGGGTTATCCACTGTGGCTCTTTAGACGTTCA 69466 29 96.6 32 ............................T ACACGCATGGACAGAATGGTCGCTAAGGGTAA 69405 29 100.0 32 ............................. ATGTAAGACGATGTACAAGCGATGTGGACCGA 69344 29 100.0 32 ............................. TGGGCGGGGTTATCAGCTAATCGTGTTAATGC 69283 29 96.6 33 ............................T CATCGGGAACTAGTGCAAGCTCCCCGGACGGAA 69221 29 96.6 32 ............................T GTTAACATCGTTTGAATCGGTTATTTGCATGT 69160 29 96.6 32 ............................T CAACATTGATTAACGCGTCAAACCATTTCATG 69099 29 100.0 32 ............................. ATGTTCGGTGTCCTTTGCAGTTTCACCGGAAA 69038 29 93.1 0 .....................A......T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.3 32 GTATTCCCCACACGTGTGGGGGTGATTCC # Left flank : AGTCCATTGTGATGGCTTCCTTTCATGAACGAGAAAAATTTAGTTATCGTAGCGTGTACTTTACCTTGGAAGGCCAAGAGGAGGATACTGACCGACCTGGGTTGAACCGAATCTTAGTATCGGTCCATTACGATACCGACGAGACGCGGCAGGCCAGTCATGACTTCATGGAGTTCGCTGAGGGGACCTGTCCGGTAATGGACAACCTGACCAATGCCGTGCCAATTACCCGCATGGAAGTAACCACAGAGACATCCAACCAAGAAACCATTAAAAGCTAGAAAATGTGTTAAAAATGCCGTTTGGTCGTCTTGATCAGCGGCATTTTTGATGGGATCAGCTTGGAGGGGGGAGCTTGACTAGAGACTAAAGTCATAACTAAGTTTATAGGAGGTGTAAGTTGTGATGGAAAGCTGAGTTATGTAGAATTAAAAATGTAAGTTAATGAAAAACGGGTGTTTTAGAATCTATGGACGCTGCTACAACGGGATTTGTTTAGT # Right flank : TTTTTCTACATCGAATCGATTGCTCTGCCGGCGTGTTCCCCGTATGTAAAAATGGTCCATTTTAGAGGTTCTGGCACCACTGTTAAAGGTGGTGCCAGAATCTCTTTTTGGTTTGATCAAAACGTAGAAACGTTACGGATGGTTAATCAAAAGCAACCGCAATAAAAAAACTTTTTAAAAAATAAACTAACCCCAATCACTTTTTTACCTGGCAATTGGTGCTGCAAATTTCCCGTTAAGAATCCCGCACCATCAACGCTTATCGTGTGCAGGTAAACCGATAAACGTATGTAAAGAAGCTGTGAATTTATCCACAATTAGGTTCTGATTTGAACAGAATTTCAAGAAAGCGCTTTACAAACGTGCAAAAATTAGGTATATTATTGGTGACAAATGAAAGGGGTTTCATACTAATGACATTAACCACTGAACAACTCGCAAAATACATTGACCACACTAACTTGAAGGCAGACGCTACCGAAGCTTCCATTCGCCAAACC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 931-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJZJ01000010.1 Levilactobacillus acidifarinae strain NBRC 107156 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 930 29 96.6 32 ............T................ CAGGCCCGACAAATCAACGTACTGGTAGTTTC 869 29 96.6 32 ............T................ AACGACGATCAATTTAAGTATAGCACAAAACC 808 29 96.6 32 ............T................ GATTAAGCAAATTGTCAAACAGTCTTCTGAGA 747 29 96.6 32 ............T................ ACTTTTGCCATTTTTACATGCCCTTTCCTGGA 686 29 93.1 32 ............T...............C AATTTAATATTTGCTTAAACGCAAGTAAAAAA 625 29 96.6 32 ............................C GAACCGGTTAATAAACGGGATTGAACGGTCGC 564 29 100.0 32 ............................. GACCTAGAATAACCGTGCCGCCCTTGTCGGGG 503 29 100.0 32 ............................. ATGCTACTTGCATCATTTCATTTCCTTTCCTT 442 29 100.0 32 ............................. ATCTACGCGTTTGACACGTCGATTTCTAAACG 381 29 100.0 32 ............................. ACCTAATTCATGGGAATCAGGAATTGCAACAT 320 29 96.6 32 ............................C GCCAACGTACTGCAAATGCTGAGATGGAGAAA 259 29 100.0 32 ............................. CACAAGGGCAAACGGCTGGCCATTCTGTACAA 198 29 100.0 32 ............................. CCTGACGGGCCTAAGTTCCCTGCAGGGACGAC 137 29 86.2 0 .......T.....C....A....A..... | CG [111] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.1 32 GTATTCCCCACACGTGTGGGGGTGATTCT # Left flank : GCCCGCGATAGTCGACCTGTTTTTGGATAAAGTAGCGCAAATCAAAATCCTGATTTTCCAGATAATTGTTCGATTGCCGCCGAGAATACCAGAAATAAAAGGTGACTAATCCGGTAAAAAGGAGTGCCGCAACGATAGATACCCAAAATAAAACGTGAATCAATTGATCTAAGCTCATCAGCACACCCCCTTCTCATCCCTACTGCGGAACCAGTTTAGCCGTTATTCAATGAATTTACTCTGTATTAGACTTATTGGATAATTTATTAAGCATTAACAATTATAGTGATTAACGATTCGTTTGGGAAGGAATTTATGAGTTGATGGTGACTCGGCCCTTCGATTAGTCACTATTTGTCTTGGCCTGATTTACTATTGCAATCGTTAATTCGTGATTGGCCGCCGTTCATCTGGATTGTGCTATGATTTAAAGCAGGTAAGTTAATAAAAAATGGTAATTGCGGATTTTTTGAATGCCGACGTAACGGAATTTGTTTAGT # Right flank : TACCATTACCATCAACTACAAAAAACCGTTAGGCTATAATAGTCTAACGGTTTTTATAGTTATCGTATTCTAAGCCTTCGCGCTGTCTCCTAAAAAGTAAAACCGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATTCT # Alternate repeat : GTATTCCCCACATGTGTGGGGGTGATTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //