Array 1 88687-88194 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDF01000012.1 Bacillus thuringiensis strain LP_1_YM Ga0304823_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 88686 32 100.0 34 ................................ ATTAAACGTGGATACCGTGCCCACGAAGGAAAGC 88620 32 100.0 34 ................................ ACAAGAAAAATGAAAAGTGTACAAATGTATTGTT 88554 32 100.0 34 ................................ ATTTGGCGTTATGATGGTGTTTTTTATAGCAATG 88488 32 100.0 34 ................................ TAAGAAACATTAATTTAGCTATTCATAAAAAGTG 88422 32 100.0 33 ................................ TTCAAGTAGAATGTATAAAAAGGTTGGCATCAT 88357 32 100.0 34 ................................ TATAGAGGGAAATGGATTGCGAATGAAGGAACGG 88291 32 100.0 34 ................................ TACCCTCAAGAATGTGGTCGTTACACAGCTAAAT 88225 32 68.8 0 ......T..CT.G...C..T.....G.A.G.C | ========== ====== ====== ====== ================================ ================================== ================== 8 32 96.1 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAGCTAACAGTTTCGGACAAAAAAGACTCCGGAAAGTTTCGAAGACATGTCAAAATTATGGTCAAAGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAGTTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGGTGCGAACATATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTTATAATTTATGAGTGAAGTTTAATATTTTTTATACAAATTCTTTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGATGAGATAATTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGGGGGTCTGCTTCAATTCATACGGCAATTAGTGTTGATCCGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCTGGGGAAGGATAAAGGTTCAGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTCTATGTCTTTTATGGAAGTATTAATACATAGTTAGCAGAAAAGACAGGTTTTAATAACGAAGATGCGGCAAAGATTAAAAATGAACTGGCTACATTATTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTACAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAACTTGGTCAATACTCCTTTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAAATAAAAACAATTGATGATTATGCTGTATTGGTACATGAATTGAATGGTTTAAAAGTTGAGATTATAGATGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 97638-97084 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDF01000012.1 Bacillus thuringiensis strain LP_1_YM Ga0304823_112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 97637 32 100.0 34 ................................ CCTTTACCATCAACAGAAAAGGCAAGTGATGAGT 97571 32 100.0 33 ................................ TATACATTATGATTGCTGCAGGTGTTGTATCTA 97506 32 100.0 32 ................................ TTACCGTTTTTAATTGTATCCGTTACTGTTTT 97442 32 100.0 33 ................................ TCAAGTAGAGCAGATTGCAAAAGCTGCAGATGA 97377 32 100.0 35 ................................ ACGTCTAAAGGGATTCTTAGGTGCTAACCCTCCAA 97310 32 100.0 33 ................................ TTTAGATGGAAGTAAGGTTGAAACAAAAGGTGT 97245 32 100.0 32 ................................ ATTATAGTTACTAAACATTAAAGCATGTTCTG 97181 32 100.0 34 ................................ ATAATACAGTTGGAACATCTTTTTATCTGTATAG 97115 32 93.8 0 ...........A...........A........ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.3 33 GTCGCACCTTATGTAGGTGCGTGGATTGAAAT # Left flank : TCGAGTTTTATATTAAAAAGATGAACACATATAAAGAGAAGAATAATAAAAGTATTCGTAAGTTAGCGAAAGAAATAGATATTTCGTATTCAACGCCTCAAGAATGCTATCTGGCAAAAGAAAAAGATTGAACGATGGTACAAAAAATAAACTTGATAAGTGGATAGAGAGACAAGAGGTAGTTAATTTGTTGTAAATTATGATTTAATATATAAAGGCTATTGTAAAGCTATCCATTTTTGTTTATCAGCTAGGTTATAGCTATGAAAATAAAGTCGAACATATTAGTGTAAAAGAATGAATTGATTTAGATAGTCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAGTACATTCGCACCTGAATTTTTATATCATATGAGTGGAGTCTGATATTTTCTATACGAATTTTTTTATTAAATAAACAACTATGTATATTTTTGAACGGAATTAACATATTTTTGTATGATTTTTAACAAAAATCGCA # Right flank : TAGTAAGTGTGTCTAACATCACAGATTGAGGAAGATGGGGTTTTTAGATAGTACTTTAACTTCAAACAATCCTTAGCGTATTAGATGCTCAACTGGAAGTATCTATATCTGCAGTATCTAACACAAAAATATAAAATGGAGGGGAAGTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATGTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56731-55785 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDF01000026.1 Bacillus thuringiensis strain LP_1_YM Ga0304823_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56730 30 100.0 37 .............................. TTACAAGCCGATGTATTCACTATCCGAGTCATCACGC 56663 30 100.0 35 .............................. GTTTAAAGTTGAAACAAAGCCGGCAGGAGTAAACG 56598 30 100.0 35 .............................. AGGTCTAAAGGGGATTGGAAGGTTAGCACCTAAGA 56533 30 100.0 35 .............................. TATCAAAAATCAGATAAATAAAGAGGGGATACAAA 56468 30 100.0 36 .............................. ATAGATAATAAAAGTAAAACCATTACATTTAAAAAT 56402 30 100.0 35 .............................. TCTACTAATTTTGCGATAAAAAATTTAGAGAATGA 56337 30 100.0 35 .............................. AGGTAGTGAGTATGAGAGTGTTGCGGTATTTGTAG 56272 30 100.0 36 .............................. TACAGTAAGTAAAATTATCTATAACATGAATGGCAT 56206 30 100.0 36 .............................. TACTTTTCAAGAGGGATATACAAATTCCGTCGTTTC 56140 30 100.0 34 .............................. ATTAATAGCAGCAGCGTTTAATCTAGTCGTTACT 56076 30 100.0 35 .............................. CCTCCTAATCAGGGCGATGGCGTTGAACTTGTATA 56011 30 100.0 35 .............................. TAATCTAGTAAATTGTAGACTTTGCCATCTAACTT 55946 30 100.0 37 .............................. AAATGATGGTGTAGGACTTGTATTCGATTTAGGCATA 55879 30 100.0 35 .............................. TTAAACTGCCTATTAAATTTCCAAATCTTTTTATA 55814 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.8 36 GTTGAACAGAAACATAAGATGTATTTAAAC # Left flank : GGAAATTCTTTTATTCCATTTAATCTAAAGGAGAAAAAATAATGAAAAATCAAATGAATGCTAATTATGCGTTTGTTTTTTATGATGTAAATGAGAAACGAGTGACGAAAGTTTTTAAAATCTGTAAAAAATATTTAAATCATTATCAAAAATCTACTTTTAGGGGGGAGATTACTCCCTCAAATCTATTAAAAATGGAAAAGGAAATTAGGAATATTATAAACGAGGGGGAAGACTTTATTACTATTATCAAAATGCTAAATGAATATAGCTTTGATGAGATTGAAATAGGGTATAGAAATAATAACGATCTCCTATTTTTGTGAATTTACCAAGTGAAATGATAGTGGGAGTCTAATAAACTTTGTTAAATCAAGGCTTACACTATTTTTTTTTGAGAATTCTATTTTTTATGAACGGCTGGTAAAAAAATCACTAAACTCATATGCAGTATAGTATTATATAGATTATGAAGGTAATAAAAAGTTGATTTAATCGGT # Right flank : TTTTGGTCTATTGATTTTACCGTAAGTACGTAACTTGTTGAACAAAATTATTAAATTAGAATTGATTTCGAGTAACTCAATAGATAAGCTGTTAAAGAGAGAAGTTTTTTCATAGAAAGGGGAATTAGGAATGGGAAAAGTTATGCCCCTGCAAAGTATTTTGAAACAGGAACAAAATTGATTTCGTTTTAATAATAATTTTGTCTTTTTCATCAACTATCGTGGATAAATCTGCATGACATGTACAATAGTTGATGTTATAATAGGTGTAGAAGTATTATAACAATAGTTTTTGCATAAACTAAAGAAGACGAGATGCTCCAACATCTCGCCTTATGTAACTGTTACCGCAAGGTGGCTAGTTGCTAAAAAAGTTTATTTTTTCTTAGAACCGCCCTTCAGACGCTTGCTGGCATTGAGGGTGGTTCTTTTCGTTTTGCGTCGCTTTTTTTGTATTTGCTTCCAAGACGTTGATAGGGATTTTCCTACGCGTTTTGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGAAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 67574-65905 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDF01000026.1 Bacillus thuringiensis strain LP_1_YM Ga0304823_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 67573 30 100.0 34 .............................. TATTATACTACATGATAGCTTCCGTTTGCTACCT 67509 30 100.0 36 .............................. ACAAAGCGTTCTTACCAATGAGCCGGGCAAAGAAAA 67443 30 100.0 35 .............................. ATCTGAATTTGTAGAAAATGCAATTGTAGAACATT 67378 30 100.0 35 .............................. TATAATGTAGGTGATTTAAAGGATAATACTATGTA 67313 30 100.0 36 .............................. TTCTAATGCGGCGAAATATTGGTCGCATATGGCTTT 67247 30 100.0 35 .............................. AATATTAGTCCTCTTTGCTAGTTGTAAATACTACT 67182 30 100.0 36 .............................. AAATGTTTTTTATTTAATTGTAAATAGTCTTCCATA 67116 30 100.0 36 .............................. GAGTCCCAATGAACTTAATGTAAAGAGTTTAAATGT 67050 30 100.0 36 .............................. CTTTTAGGGATGTAACGTCTGTTTTTGTACCTGTTA 66984 30 100.0 36 .............................. GTTGCTGGGGAGTAAAGGGGTCACAGTGGATAACAA 66918 30 100.0 35 .............................. TAAAAAATATGTGTGCTGAAATTGATAGTTTAAAG 66853 30 100.0 36 .............................. TTACCTTACAGACAAGCACATAGAAACGCTGAAGAG 66787 30 100.0 36 .............................. GTATTTATTTGTGCGGAATATATATCCCTACATATT 66721 30 100.0 37 .............................. TATTTACCATCTTTCGTTTTTAGTGGCGCATACCATT 66654 30 100.0 36 .............................. GCTGGTGCGAATAAAAAACCGCCAGCTAATGCTACG 66588 30 100.0 36 .............................. AAACTATGAAAAAAACAGTCGGTCAAAACATTAAAC 66522 30 100.0 36 .............................. TAAAAGAAATGTTTCCCAAATTGTAGCGGTAAAATA 66456 30 100.0 35 .............................. TTTGGTTTCTGATCATCTTTTTGAGGCTTAGAACG 66391 30 100.0 34 .............................. AAAATTCATTTTCAGATATTAAAGGACACATGTT 66327 30 100.0 35 .............................. CGACGAGGGGACGCTTGAAAAGTATTGGTCAAAGG 66262 30 96.7 36 ................A............. ACAACAATTATCAGCACAAGAACGTGCAGCGATGTT 66196 30 96.7 35 .................A............ TAATACCACAAATTTCCCGAAATTCGGTCATAGAG 66131 30 96.7 35 ................A............. ATAACATTAAAAGACAAAGGAAAAGCGTACAAGAG 66066 30 100.0 35 .............................. ATGTACGTTGTAAAACTTTTTTGTTTTGGAATTGT 66001 30 96.7 36 ................A............. TACAAATCTTATCATAACGTATGATTTAAAGAATTT 65935 30 76.7 0 A.....T.GA......A........A...A | G [65912] ========== ====== ====== ====== ============================== ===================================== ================== 26 30 98.6 36 GTTGAACAATAACATATGATGTATTTAAAC # Left flank : AAAAGTGTATAATCCATCTTAAACTAGTAGCTGAATGGATAAACCAAAGGCACACCCCTTAATGGGGTGTGCCTTTTTTCGTAGAAAGGGGAAATCTGAGTGGATAAAAAGAAAAAGCAGCGTGTCAGACGAGTGATTTTTATTGGAGTAATTGCAATGATTGTATCGTTATACATTGGAAACGAATTTCAGGATCGAAATGGGAAAAGTTATGCTCCTGCAAAGTATTTCGAAACGGGAACAAAATTAGTTTCATTTTAATTTTTTACATATTTTCATCGAACAATATAGGATAATAAGGAAGTTACCGAATATTTTACCAGATTATTTACCAACCTAATGTATTGGTGATAACATGTAAATGTAGATAAAGTAAGGGATTTCTGTATGAATTCTAAGTTAATGAGGTTTATATCAATTAGCTGGTAAAAAACGTATAAACCCACGATTTCTATAGTATAATAGTGGATGCAGGAAATAAAGAGCCAGTATTATTCGGT # Right flank : CTAAAAAATGTTATTGGTTTAGGAAGTAACCTGGTTAAATAATAAAGTAGAAAGTATTATAATTTCGAAATAAAAAAGCACACTCTTGATTTGTACTGACCTCTATAAAATGGACAGTTTAATAAGAGTTGTGCTTTTTTATTTAAAATAGAAATATAAGGTGGGGAGGATAGGGTGTTGAAGGAGCTTAGTATAATTTAATTGTTTACATTTTTGTAACATAAATAAATCGTAATATTAATTATAATATGATATCCTATTTTTAGGAGGTGTTAAAATTTGAATTTTGAGTTAATAATTACAACTTTATTGAAAGAAGATCTTCATTATGAGGATAGTTTGCAATTAATTGGTAGTTTCATCAACAAAGCGATGCTTCGAAGTGAAAAATTAAAAGCCTTGCATGAAAGAAAAGGTTATAAAAATTATGTTTTTAGCAATTTTTATCCATTTGAAAAAGATAAAATATACAAAAGTGGTCGAGTGTATGTATTTCGATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATATGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //