Array 1 163060-162542 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLWR01000016.1 Kribbella sp. VKM Ac-2541 Ga0310564_116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163059 29 100.0 32 ............................. GTGGTCCCTGCACCGGTGAACGATGTCGATCC 162998 29 96.6 32 ......G...................... TGCCGGTAGATGCGCGAATCGGTCCAGGCCAT 162937 29 100.0 32 ............................. GTCGGTTACGGCACCCTCCAAATCATCCCCTC 162876 29 100.0 32 ............................. GGCGGCGGAAAGAGCGCGGCGGCGGTGTGGGA 162815 29 100.0 32 ............................. GGGTCCGGTTCGGGATCGGGGGCGAAGTGATC 162754 29 82.8 32 C..........C....T....A......G GTGGACAGGTCCGGTACGACGATCTCGCCGTC C [162740] 162692 29 86.2 32 C..........GC...............G TACGGTGGGTACGGCCAGCTCGATCCGAAGCG 162631 29 89.7 32 C..........G................G TCGTTCGGGAACCGCACATCCGTGATGACGCC 162570 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 94.7 32 GTGCTCCCCGCAGACGCGGGGGTGATCCC # Left flank : CCGGTCGGGAAGTTCTGACTTCGTCAGCGGCACGTACAGACCGAGGTCGCACATGCGCTTGGCCAGGACCGTGTCCTGAACGGCGAACGCCGGTGTCGCCTTCCCCAGGTCATGGACCCCCGCAAGAAATGACACCGCCGCGCAAGCCGCCGTCGCATCACCGCCGAACTCGGCCGCGAACAGTTGCGCCACGCTGGGCGCCAGCCACTCGGCGAACAGACGCCGAGCCACATCGGTCGAGTCATCCAGGTGCTGCCAAAGCGGCAGCCACCCGCCTTGCTCGTCGAGCGACTTCGCCCACACGGACCGGGCAGCATCGCTCAAAGCGCTCTGATGTCTCATCACCGATGACGATCCCCGAATACCCGCATTGAACCAATACTGCGCAGACTAGGCCAGAGCCCGGACAAATCTGCTCCACAGCGTCCAACCCTGAGGCCCCGAGCATCCAACTGATCTAAAATCACGGATCCGAGGTGTATCTGCGCAGGTCATGCAGT # Right flank : ATCATCACGACCCCGGGTCGAGGAGTGGATCGCGTGCTCCCCGAACGCTCATCACCCGTCACCTCCTTGAAAAGGACGCTTCCGCGGAGGTTGCCGAGTTGTTGCGCGGTCGCCGGGTCCTTGATTCGGTGGGGTGTTGAGAATCGATCGTTTTCTGGACATCCATTGCGCGTGTCTGGGTCGGCGTATGGATGGACTGGAAGTTGAACTCCTGCCGTGGCTGACCTTCTCATACGAGTTCGTGGCCTTGAGCATCAATCACGCGACGACCTCCGACCCTGAGCAGTGACCAGGGTCGTTGAGGGCTGTTCAGGGCCATTCGGGGCATCTCGGAGGCACCGGTCAAGGTTGCTGATCGACCGTCGATGGGGGTCGATCGCGCCCTTTGGCATGGTCGGCGCTGAGCGTGCAGCCCGCCCTGATCGGCGCGAGCTGTCCACAGCCGTCCACGGGTCCTGTTAGCAAATCCGTTAGCAACGTGGCCAGCTTGGAATGGCAGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 170892-172264 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLWR01000016.1 Kribbella sp. VKM Ac-2541 Ga0310564_116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 170892 29 86.2 32 .........A.G..T.............C AACAACTGGAACGACACCTACGGCGGCAGGCA 170953 29 93.1 33 ...........C................C TACACCGGCACCGAGGCCGTCACCGAGTGGGGT 171015 29 100.0 32 ............................. TGCATACCGTCCTTGCGCTGGGTGTGGTCCTC 171076 29 89.7 32 ...........G.......A........C CCGGTCAACTGGGTGCTGATCCCGGTCAAGTG 171137 29 89.7 32 ...........GC........A....... GACATCACGCTGACCGACGTGCAGCTCATCCC 171198 29 96.6 32 ............................T TACACCCGCTGGCACACCTGGCAAGACAGGCT 171259 29 93.1 32 ...A........................C AGCAACGGCTACACCACGTACGTGGAGAAGGA 171320 29 96.6 33 ............................A ATCATCCGGGAGTGCTCCCAGGCTGGTGACGTA 171382 29 89.7 32 .........A.G................C GGCACCGCGTGAACCTGGACCTGCCAGCCGTT 171443 27 93.1 32 .....-...........-........... ATCACGTACGAGACCGTGCGCCGGAACGACCG 171502 27 89.7 32 ...........-.....-..........C AGGCAGTGCGCGACCAGACCGCACGCGAACAT 171561 29 100.0 2 ............................. TT Deletion [171594] 171592 29 93.1 32 .............C..............C AGATTCGAACAGCAACATGCCCGACCGCGGGG 171653 29 93.1 32 .....................A......C TTGTACGCGGTGTCCAGCACGATCGCCTCGGC G [171656] 171715 29 96.6 61 ...............C............. CGGTCTACGTGCCCGAGGGGGTGATCCCATCCGGATGAAGCCGGGTGCATACGGGTTTCTC G [171737] 171806 29 89.7 32 ..............T......A......A CAGACGTTCGAGACGTTCGGCCGGGAGAAGTC 171867 29 86.2 33 C.........T..........A......C CTCGTTCAGACCGCTTACGACAAGATGGTCGAA 171929 29 82.8 32 C........A.GC...T............ TGGGTCAACGCCATGGTGGCATTCGTTGCCGC 171990 29 93.1 32 ..............A...A.......... AACGGCAAGAGCGAGATGCTGGCCGGCATCGT 172051 29 96.6 32 ...........G................. TAGGCCAGGATGGAGCGGGTCGCGGCGCGGCG CG [172059] 172114 29 96.6 32 .................A........... TGGTCCTTGTTGAGTCCCGGCACCGGCGGGCG 172175 29 89.7 32 ...........GC...............C AACATCTACACCGGTGCTGCGACTCTCGGCTC 172236 29 75.9 0 .C.........GT........C.C.GG.. | ========== ====== ====== ====== ============================= ============================================================= ================== 23 29 91.8 32 GTGCTCCCCGCAGACGCGGGGGTGATCCG # Left flank : CCCCAACAAGCCCGACTTCACCCACGTCATCGAACAGGCCGGCTGGCCGACGACGCATGCCTGGGACATGCGTTCGTACGACGGCCTACTGGACTCGCTTCGGACAGGCCAACAGTGGCAGTTCCGGCTCACCGCGAACCCGGTCCATTCAGCCCGACGCGACGGATGGAGCGACACCAAACCCCTGGCCCACGTGACCGTGAAGCAACAGGAACAATGGCTGCTGGACCGCGCCCCCAGGCTGGGATTCCAAATCGTCCCGAACCGCACCGCATCGCCCGAAGGCGAACCCGATCTCGCGGTCATGGCGCGCACCGTACACAGGTTCAAGCGCCAAGGCTCGACAGTCACAGTCGCCACCGCGACCTTCCAAGGACATCTCGAGGTCACCGACCCCGCCACTCTACGACGCACCCTCACCCACGGCATCGGACGCGCGAAAGCCTACGGCTGCGGACTGCTCACGCTCGCACGCCCGGATAGGCCTTGACGTCCTAGCC # Right flank : GCCGTTCGTAAGTGGCCCGTACAGCTCGGGTGGTGGTGTGCTCCAGGGCAGTGGTTCGAGCGGGCCGTTCTCGTGGTGCTTGGTGCGGGTGCAGTTCTTGAAGGTGCCGTCGCGGTCCATCAGTTTGGCCATGTGCGGGTAGCAGTGGTCGCGCCACCACACGCTCATGCCGGTGCCGGGTTCGAGGCGGAGTGCTTCCCAGGCGCGCCAGAGTGCGTCCAGGACGCAGACGGCTTCGCCGTGTTTCCACCATTCGCTGCACCAGGGTTGGTTCGGCGCGATGGGGCGCCTGTAGGCCTTGGTGAGGAAGTGTTCGACGAAGTCGGGCAGGGTCTTGAAGTACAGCTGCGGTTGTTCGCCTGCGGCGTCTTCGAGGGCGTCGCCGGCCGCGGCGGCTTCCTCCTCGAGCTGGTCGGCTTCGAGGTTGCGCTGCGCCTGATCTCCGGCGGCGTCGCCGTACGACGTGTCGTCCCATTCGGTGTCGGGCAGCGTCACGAAGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:-0.38, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //