Array 1 19162-17809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKDE01000012.1 Escherichia coli strain MOD1-EC910 MOD1-EC910_12_length_103550_cov_37.548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19161 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 19100 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 19039 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 18978 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 18917 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 18856 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 18795 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 18734 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 18673 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 18612 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [18586] Deletion [18572] 18570 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 18509 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 18448 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 18387 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 18326 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 18265 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 18204 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 18143 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 18082 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 18021 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17959 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 17898 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 17837 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4925-5807 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKDE01000024.1 Escherichia coli strain MOD1-EC910 MOD1-EC910_24_length_65301_cov_37.4652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4925 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 4986 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 5047 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 5108 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 5169 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 5230 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 5291 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 5352 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 5413 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 5474 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 5535 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 5596 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 5657 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 5718 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 5779 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //