Array 1 1786706-1787815 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629973.1 Akkermansia glycaniphila isolate APytT chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1786706 33 97.0 34 ........................A........ ATCAGCCTTGCCGCCGGTTCCAATATCGTGAAAA 1786773 33 97.0 34 ........................A........ ATTGAACATGACGGAAAGCGTCTCCCTGTATCTG 1786840 33 97.0 34 ........................A........ AACAGGGGGAAGCAGCAAGCCGCTGAGCGAAGGG 1786907 33 97.0 33 ........................A........ TAGATTCCGGGGTGACGCGGGCGGAAGCGATGA 1786973 33 97.0 36 ........................A........ TCAAAACAAGAAGTCATTGACATGAAGGCGATGAAC 1787042 33 97.0 34 ........................A........ CCTCCCTTACCTCGCCTCCCCGCAGCCTGAAAAT 1787109 33 97.0 34 ........................A........ TCCACAATCAGCACCGTGCCGCGTGGGCTATATC 1787176 33 97.0 35 ........................A........ TCATCTCGGCTACATCACATGAGGAAATTGGCATG 1787244 33 100.0 34 ................................. CGGCGGCGATGGGTTCCGGGTCGCCGGGGATGGT 1787311 33 100.0 34 ................................. TGCTGGCCATGCGCATCTCCTGCGTCGAGTAGAT 1787378 33 100.0 34 ................................. TTGCCGTCAGATTCCCTCTTCACCCTCGCCGCAT 1787445 33 100.0 35 ................................. ATCGGAAGCCCGCCTGTCGTGTCGAATAATAGGGG 1787513 33 100.0 34 ................................. CTTCATCCCTGCCCGGCACTCCGCCACGGGCAAG 1787580 33 100.0 34 ................................. GCAGGGGATGCCGCTGTCCATATCCGGGTACCAT 1787647 33 100.0 34 ................................. TGGCATGCTTCGCCAGCATTTTTTGCTCGATCGG 1787714 33 100.0 33 ................................. CCTCCGTTCATGAGGGTGCAGACCGGCGATAAG 1787780 33 81.8 0 ..........C...........G...A..TTT. | GC,G [1787802,1787808] ========== ====== ====== ====== ================================= ==================================== ================== 17 33 97.5 34 GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Left flank : ACAATGAAACGGCGCAGTATGCCTATGACCCTGCGACGGCGACTGGGTGGGAAGTCACTTCCATCCATGCGCTCACTGCACCGCTGAACTTGGCGCCCGAACCGTCCGCCGCCGCTCTGGCTTTGGCGGGATGCCTCGCCGGGATGTGGAGAAGGCAGCGGAGAGTATGAGGCTGAGTCTCCTGCAGCAAGGGGAAAGGACAGTGTGGCAGCTTGTGAAACGGGCGGTATTTTGCGGCGGCTGGGCAGGCGATTGATGGAAAAGACTTGCCCATCGTCGAGACCTGCCCTACAATTCCGAATGTCAGGAATGGCCGCCGTGGCGCGAACCCCAAGCTGTGGCGAAATTCCCGGGAGATCTGCGAAATGCGTGATTCGCTGGGAATCAGAAGATTGAAAGGACTGGCGCGGGTGCAATCGTCTGCTTTTCGGCAGTACGTCAGCAAGTCCGCGCAAATGCAAGCATGGACAAGGCTTTATCAATGTGTTATGGTCTTGGCT # Right flank : CTACCTCAGGCCATTTCTTCGTCATGGATGCCGCTTTTCATTTTGCGGCGGAAGAACCATGACAGGGTGATCCATGCTACGGCGGAGGAGATGAGGTCTGCCGTGGCCATGGCGAACCAGATGCCGTTCTGCCCCCAGAAGGTGGGGAGGACGAGCAGCAGAGGCACGAGGAAGATCATCTGGCGGGTGAGCGAGAGGAAGATGGAGATTCGCGCCCTGCCGATGGATTGGAAGAAGTTCCCGATGACGATGGGGGCGCCGATGAGGGGGAAGGCCAGTGCGCTGAGGCGCAACCCGCGTTCGGCGATTTCTTTCAGTTCGGCGTTGTCGGTGAACATGCCGGCGAGCATGTGCGGGAAGAGTTCGCAGGCGAGCCATCCGAAGGTGGTGATGCCGGTGCCGGCGATGATGCCGTAGCGGAGGACCTGCCGCACACGGTCGAGCCGTCCTGCGCCGAGGTTGTAGCCTGCGATGGGTTGCATGCCCTGCGTGAGGCCGAT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCTCACGGAGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1801379-1801750 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629973.1 Akkermansia glycaniphila isolate APytT chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1801379 33 100.0 34 ................................. TCTCCGCAGCCGGGAGAAGAAATCAAAATCACAA 1801446 33 100.0 35 ................................. TGAATGTGTTAATGCTTTATTTGAGCAGGCAGAAA 1801514 33 100.0 34 ................................. TCCGACCCGCACCCGGAGCCGGGGGTCACGCGCC 1801581 33 97.0 35 ........T........................ TTTGAAGACTATGAGTCAGCCGTCGCCTGCGAAAT 1801649 33 100.0 36 ................................. AGTTCAGAATTTAACGATCCTACGATGTGGGCGCAC 1801718 33 84.8 0 ............................ATTTT | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 97.0 35 GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Left flank : CCGACGCCATGGAGAAAAATGAGGCCACCAAGATCATGGAAACGCGCCGCCTCCGCTTCCACTGCGGTTGCACCATCGACAAAATCCTGCCCACCGTCCGCACGATGAAAAAGGACTTTGCCGACCTCCTGTCGGAACAGGGCAAGCTGGACATCACCTGCCCCCGATGTGCGGCCCAGTATGTTGTGACTGCTGACATGCTGCAGGACGGTCCCGATGAGCGGGAAGAAGAATGAGGCCGCTCGGGTACGATTGAATGCTTGCACCCGGAGCTGTCTCATCGTATGATTTCATGCGTGGCGGCTTCCCTGCTGCCATGCTGCGCGAACCCCAAGCTGTGGCGAAATTCCCGGGAGATCGGCGTATTTTGCAGTTTGCTCAGTATAAGGATGTTGAGAGAATTGGTGCGAAACCTCTTCCGCGAAGTGACGTATCACGGAAGCAGGTTCGCGAAAATGCAAGCATGGACAAGGCTGTATCAGCATGTTATGGTATTGGCA # Right flank : TATTGATAAAACGTTGAAAATAAGTAATTAAGAAAATTACTTGTAATTTTTTTGCAATGCGGAAAAGCGCGCTATGACCGCAAAATCAGTACACGAAAAGCCCCGCCTTTGAGGGGCGGGGCTGGTTGAGGTTAGACTTGCTTCATATCCTGTTCGTAGTCGGCTGGAATATGGTGTGTTTATCAAAAATTAGGATTAATAAACCATTGAATTAGATCGTCTTTTGGATTATTAGCCAACCTTAAGTATGTTGCGGCCTTTTCGAGTGCGTCAAGGCTTGTATGTGCATACACACAGCTGCTTATGTAGGGTGCTCCCTGATCGCTTCTTTGGTAATGATGACTCACGTCGTACCTGTACAGCTGACTTCTTGTATTTAACCATATTTTAATTTCTAACCTTTGAGATCCCATTATAACCCTGTATTGTTCTGCAAGGCTCTCAACATCTTCAAAGATAGTATTATTTACTTCTGTTTTCATTTTATTATATTTTTTCTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1836746-1837308 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629973.1 Akkermansia glycaniphila isolate APytT chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1836746 36 100.0 30 .................................... GTGCATGATGGTCATTAGTTTCCGTAGATG 1836812 36 100.0 30 .................................... GTATTCCGGTTTGAGGGGCAGGGTTTGTTC 1836878 36 100.0 30 .................................... AATAATTCCAGCTATTTACTATGCTAATTA 1836944 36 100.0 30 .................................... GTTGAGACTGACAACGTAGCCGCCACTCTT 1837010 36 100.0 30 .................................... TGCTTGATGACCATGGGGATGCCGTGGTCT 1837076 36 100.0 30 .................................... CCGGCTCGTATCCCTGTACCGAGAGCGATT 1837142 36 97.2 30 ................T................... GAATTTCCCTACCTCGTCACCCGCTTTTTG 1837208 36 91.7 30 ..............G.T.........G......... ATAAAGAAGGCGACACTGTCTCAATCGCGA 1837274 35 91.7 0 ............................-.T...T. | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 ACTGTACCATGCCTTACTTTGGATTCAAGGCAAAAC # Left flank : CCGAAACCTTCTGCCGCGGGAAAACAACAACGATCCGCGCCTCTCTGGAAGCCGTATGCCGAAGCTTCCGGCAGGCGGTGTTGTCTCACCAGTCCGGACCTTATGAACCATGGACAATATCAACTATAAAATGGGCTGGCTCGTAGTCTTCTTCGATCTCCCGACCACCACGCGGGAGGACAAAAAACAGTACATCCAGTTTCGGAAAAACCTGTTGGAAGACGGTTACCTGATGGTGCAATACAGTGTGTATGCACGGGCTTGTGTCACTCAGGAACGAATAGAAACCCATGCCCGGCGCTTGCGTAGCATGGTGCCTCCTGACGGTTCGGTGCGATGCATGTTCGTGACCAATATCCAGTGGGACAAAACCTACATTTTTCACGGAAAGTCGAAGCCTCCACCGGATATCTCCATGCCTGAACAGATGCTTTTGTGGTAGGACTCGTTGCGAGGAAATCTATTTAAGATATTCAATATAAAAGTAAGGCATGGTATCT # Right flank : CGCGGATGATATGTTGATAAGATTATTTTCGATGCTCATTTTCAAGAGCATGTTTTGTTGTTATTAACAGGTTGTTACAGCCGTCTTCGAGGAGGCGGATGACGTGGGTGAAGCCTTCGGGGCCGCCGTAGTAGGGGTCGGGGATTTCGCGGTCGGGGTGGTTGCGGAGGTAGCTGCACATGGGCATGATGCGGGCGTGGTGTTCTCCGCTGCCGGCGAGGGCGAGGATGTCGCGGAGGTTGGCGTTGTCCATGGGGACGATGAGGTCGAAGGTTTCAAAGTCGCGGCGGGTGAGCTGGCGGCCGAGGTGGCCGCCCCAGGCGTAGCCTTCGTGTTGGAGGGCGGCGAGCATGCGGCGGTCGGGTTTGTCGCCGATGTGGTAGTCGGAGGTGGCGGCGGAGTCTGCCTGGATTTTGTGTTCGAGTCCGGCTTTGCGGATGAGGCTGTCGAAGACGATTTCGGCGGCGGGGGAGCGGCAGATGTTGCCGAGGCAGACGAAG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGTACCATGCCTTACTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 2800145-2801173 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629973.1 Akkermansia glycaniphila isolate APytT chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2800145 33 100.0 33 ................................. GGAAAACCGTCACATCAAGCCACACGTCATCCC 2800211 33 97.0 33 ................................G CGAGATATGGTTGACAAAGGACGGGAATGCGCC 2800277 33 97.0 33 ................................A ACATCAGAAATATCGTGCGAGCATACGATAGCG 2800343 33 97.0 34 ................................A ACACAGGCATCATGGAGATGCAGCGTGCGACGAA 2800410 33 97.0 34 ................................A CCGATACCCGCGGCCGCCGCTTCGAGTTCGGCCG 2800477 33 97.0 33 ................................T CCGATGGTCAGCCAATTGCCCAGTACATCACAA 2800543 33 97.0 34 ................................T TGAGGTGCTGACCGCCAGTCGCAAGCTTGTCATG 2800610 33 100.0 32 ................................. GATGATGCGGGAAAACGTGTCGGGCGTGGAGG 2800675 33 97.0 33 ................................G GGTACTGCACGACATTGCGTATGCCTGCCGACG 2800741 33 100.0 33 ................................. CGCTGCCTGTCGCAGCCTCTGCTAGAACGGAAT 2800807 33 100.0 33 ................................. CGGTCGGGGAATCCCGCACGTATTCCCGGTCGC 2800873 33 97.0 34 ................................T TGAGGTGCTGACCGCCAGTCGCAAGCTTGTCATG 2800940 33 97.0 33 ................................T GTTGTCGATGGCTTCTTCGATCATGTCCACGAA 2801006 33 97.0 34 ................................A CGGACTCATATCGCAACGGCAGCAACATGGCCAA 2801073 33 97.0 33 ................................G ACGGCGAGGATGGCATCCGTGGCGTTGCAGGCT 2801139 33 78.8 0 ..........A.....T....G..G...C.G.G | A,C [2801159,2801161] ========== ====== ====== ====== ================================= ================================== ================== 16 33 96.6 33 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACC # Left flank : TGTTCGTCATCATCAGCTATGATGTGGCTACGGCCACGAGGACGGGAGCCCGGAGACTGCGGCGCATTGCACGCATCTGTGAAAACTACGGACAGCGCGTGCAGAACTCCGTCTTCGAATGCAAAATCCCGCCGAACCTCTTTGTCTCCGTCAAACAGCAGCTCCTCGATACCATGGACCCGGAAGAAGACAGCCTGCGCTTCTACTTTCTGGGCAAGGATGATGAAGGGAAAATCCTCCATGTCGGAGCCAAGAAAAGCTACGACATCGACGGCACGCTCATCATCTGAAACATCAATCGACCGCAGGCAGGGCGCAACACGCGCGAACCCCAAGCTGTACCGAAATTCCCGGAACATCCGCGAAATCGGCAACAGCCTCGTGTTCATCAGATTGACAAACAAGCCCGCTTTATGAAGTTGTCAAATAATGTATATTGACAGCTCGTCGGCGGAAATAAAGGAATTGCCTCTTTGGTGACAACATGTTACAAAGTGGCA # Right flank : GGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCAGCGGGGTTGCGCTTTGTTGGGGTAAGGGCCGTTTACTGAACGTTGTAGATGTTCATGGCGGCTTCGATGCCGTGGGTAGCGGCGTAACGGGCGGCATCCGCCGCCTTTTCGATGGAGACACCGAGGAGTTCCTGTTCGTCAGGGCGGAATTTGCCGAGTACGTGGGCGGTCATTTCCTTGCCGCCGGGGGCTCCTATGCCGATGCGGAGGCGGGGGAATTTGTCTGTGCCCAAGTGGGCGATGAGGGATTTGATGCCGTTGTGTCCTCCGGCAGATCCGCCGGGGCGGAGTTTGAGGGTTCCGACAGGGAAGGCGATGTCGTCGTAGATGACGAGGATTTGTTCGGGGGAGAATTTGAAGTACCGCATGAGGGGGCCGATGCTGGCTCCCGAGTCGTTCATGTAGGTTTGCGGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //