Array 1 3048506-3050058 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029800.1 Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3048506 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3048567 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3048628 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3048689 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3048750 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3048811 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3048872 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3048933 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3048994 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3049055 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3049116 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3049177 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3049238 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3049299 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3049360 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3049421 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3049482 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3049543 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3049604 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3049665 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3049726 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3049787 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3049848 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3049909 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3049970 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3050031 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3066373-3066890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029800.1 Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3066373 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3066434 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3066495 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3066556 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3066617 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3066678 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3066739 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3066800 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3066861 29 93.1 0 ............TC............... | A [3066888] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //