Array 1 514240-514934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIZ010000001.1 Listeria seeligeri strain FSL W9-0659 NODE_1_length_590387_cov_90.691567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 514240 36 100.0 30 .................................... CAACAAGAAAAGCAGCGGATAGAGGTACTT 514306 36 100.0 30 .................................... CATCGACAGTCTCGATGCATTACAACAACT 514372 36 100.0 30 .................................... CTCTTCTTTGTTATATGAATTCATTCCTAA 514438 36 100.0 30 .................................... ATCCTTTCGGGTTCGGAGCTAAAGAATGAG 514504 36 100.0 30 .................................... AAGTTTAGCAAATGTAAATAAATTAGCGGA 514570 36 100.0 30 .................................... CTGAAAACTTCACAGTAAAGAGATAGAAGC 514636 36 100.0 30 .................................... CCATAATTGGTAGTTAGATTAGTCCCACCT 514702 36 100.0 30 .................................... AGATGATGATTACGGAAGAGGAATTTATTC 514768 36 100.0 30 .................................... CCTAGCAAAAGCTGGAAACTGGGAAAAAGT 514834 36 100.0 30 .................................... TACAACAGAGCGCATTTGATAGGGTTTCAA 514900 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTCAGGACTATTTTCAGGAAAATAATATAAACTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGACATCTGAAACTTTTATTTTTTCTTGACTATTTTCTTGTAATAATCCATGAACTAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACACTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATCAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGCGTTTTTATACTTATCCACATTAGAC # Right flank : TTCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGCTAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGTAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGAATCTATAAACCATTTTCCGGTTTCAATTTTAACCAACTCCAAATCTAACAATACTTGATTTTCGGTTTTCTTTTGATTGTCGACTTGAAAAGCAGACCAGGCTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTACAGTGATAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 684-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIZ010000149.1 Listeria seeligeri strain FSL W9-0659 NODE_149_length_715_cov_1.802508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 683 36 100.0 30 .................................... AATTTCGTATTGTTCCAAACTGGAATACGC 617 36 100.0 30 .................................... AATTATCTTGGCGGGCGATAATGATGCAAA 551 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 486 36 77.8 0 ......A..T...A......A..G..A.G......G | T,T [452,454] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : ACATAAAATTGCCAACACTCTATCTTGTGCA # Right flank : GAAATAAAATCTTTCACATCAAAAGTTCTTGGTAGCCTTTAACAAGGATTATAAAAGTTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATCTAGATTTCTTAAACTTAAATTTCGAAGCAAACATCGACCGTGATACAAATGGTTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACGAATAAAGCAGAAT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 222009-220490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIZ010000003.1 Listeria seeligeri strain FSL W9-0659 NODE_3_length_422386_cov_114.927991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 222008 29 100.0 37 ............................. AGCCTAAACCTTTCAAATATTCTCTTTGCATTTTTGT 221942 29 100.0 36 ............................. TCGTCTACAACTACACGGTATCCTAAATAAGTTGGA 221877 29 100.0 35 ............................. AAGCTTCCGGCGTATCAGCTAAGAAGCTTTTTTCG 221813 29 100.0 36 ............................. TGATAAACGATTGTAGTGAGCCTTGAGCATCTTGGT 221748 29 100.0 35 ............................. TATTATAGATAACTAATAGTTAACTGTCAAGACAA 221684 29 100.0 35 ............................. CCTTTTTCGGACTTTTCACCAGTTCCGAATTCATA 221620 29 100.0 36 ............................. GACGGTAACATGACCTTTTCGAGTAACGAATATACT 221555 29 100.0 35 ............................. TCTACCGTATCAATTTCTTCTAAAATCAAAAATTT 221491 29 100.0 38 ............................. CCCCAACTTGTAAACCGATTGGATCGCCCTCCATCGCT 221424 29 100.0 35 ............................. GCTTTTACTTCTCCTGTATCCCTACCGCTATGATA 221360 29 100.0 35 ............................. TTGTATTGACGAGCATTGTATTTAAATTTAAAATC 221296 29 100.0 36 ............................. CGCTGTCATGGCATAAGTATGGACCGTGGAATTATA 221231 29 100.0 36 ............................. ACGAGATGGTAAGAACGCATTGTTTGACTCGCTCCA 221166 29 100.0 37 ............................. AAAAGTATTCGCTTCTTTGATAAATCAATTCCATCAA 221100 29 100.0 36 ............................. GCAGGAAAGGGAGAAACTTCATTAGATGGGCTAAAG 221035 29 100.0 38 ............................. TTAGGTTTCGATAGGACATATTGATATTGACTACATCT 220968 29 100.0 38 ............................. TGAATTGTTTGCCTTTTAGTTTCAAACATTTAATTGAT 220901 29 100.0 37 ............................. ACACGTAATTTACTGATGCATTCTTCTTTCTCAGACA 220835 29 100.0 36 ............................. TCTTTTCTTTTTGTGTTTCTGTGAGATAATAATCCA 220770 29 100.0 29 ............................. ATAATTTCTTTTATCTTTTCATTCTTATC 220712 29 100.0 37 ............................. CGAATAAGTAGAGCTGGGATTATAATAATTTCCTTCA 220646 29 100.0 36 ............................. AAAAATGGATGAAGCAGGGTATGATGCAGAATGGGA 220581 29 93.1 34 ............C..........A..... AAAAGTTCGATTGCTTTTTAATCGTCCAAATATT 220518 29 75.9 0 .......AC......CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 98.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTATGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGAACGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCGCCCACCCTTAAAGCCAATAATCTGTTTTAAGGATTTTTTCATCTAAAAACCACACCACAATCCTCCCATTTTTTTCATCCAGCGAAAACCGTTTTTGAAATATTTGTAACCGCTCGCATGGATTATATGCAAGAAGAGAGCTATTATTTGTTAGATGCAAAAGAGGATGTTACATAGGTTTGAAGGATGGTGTGCGGGAAAGCGATTTAATTGGAGCACTTGAAGAAGCGCAAACCGGGGCAGTCAAGCTGGATGCAACACGTTACGTGAATACTTTCCCAGAAAAAAACACGCCCATTTCTTAATACCATCGGGGACTGTTCATTGTTCTGGCGCTGATTCGATGATTCTCGAAATAAGCTTATCTGCCTACATTTTTACATTTAAGCTGTGGGATTGGGGACGATTAGGCTTAGACGGCAAACCACGGCCAGTGCATATTGATCATGGAAAAAAAGTGATTAATTGGAACCGTTCTGAAAAATGGGTGGCGGAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 231822-230623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIZ010000003.1 Listeria seeligeri strain FSL W9-0659 NODE_3_length_422386_cov_114.927991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 231821 29 100.0 37 ............................. ACGATACCGATTTGTTTGTCTTCGTAAACTTTTTCCC 231755 29 100.0 36 ............................. TCATTCATTCCGCTATTCCAAATCTCAATAGTATCG 231690 29 100.0 37 ............................. CTTCTTTCACAACTAATAGACGGCCAATCTTTTTTCC 231624 29 100.0 36 ............................. TGAGTACAATGTCAATGCAAGAGAAAAAAGTATTTT 231559 29 100.0 37 ............................. AAAGATTCGCTTTCATTTCGCTATTCACAGAGCCGAG 231493 29 100.0 35 ............................. AAACTCATATGTACATTTCCTGTAATTCCAGATGT 231429 29 100.0 37 ............................. GTATCTAATGTAGAAGCTATTTGCTTACCTACTCGCC 231363 29 100.0 36 ............................. ACGGTCTATCGAGCGAAGGCGGGAAATTTTGGTAAA 231298 29 100.0 34 ............................. CCCCTCGAATGGCTTCATCATCGCATGTGCCTAG 231235 29 100.0 34 ............................. ATCATTATTGATGTTACTAGCAAAATTCCACTTG 231172 29 96.6 37 ............C................ TAGTAGGAATTTCCGGTTCTTCAGTTTCCGGTAAAGA 231106 29 100.0 37 ............................. TTGCCAGTTGTCCCAAAAACGCGCCCCAATCTTCTCG 231040 29 100.0 33 ............................. GAAAAAGAATATGTATTCCACAATGCTAGTTTT 230978 29 100.0 36 ............................. GTAATTAAAATTGTCCTATTTTCTAAATCTATCAAG 230913 29 100.0 37 ............................. TCTGCATTATCTGAATCTGATTTAGCTTGCTCCATCT 230847 29 100.0 37 ............................. GTTTTTGGTAATGGTTTTGGTGGAATTTTTTCATTGA 230781 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTGGGTTC 230716 29 100.0 35 ............................. ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 230652 29 86.2 0 ........C....C..A...........G | T [230625] ========== ====== ====== ====== ============================= ===================================== ================== 19 29 99.1 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCTAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGTCAATAAAAAATTAAAAATCAAATTCTTTACTAGTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 238173-237368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIZ010000003.1 Listeria seeligeri strain FSL W9-0659 NODE_3_length_422386_cov_114.927991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 238172 29 100.0 36 ............................. TCGGATACCACTCAAAAAGCAAATGCAGTACTGCAG 238107 29 100.0 37 ............................. AAAGTAGTATCTAACTCATTTATCATCCACTCCTTCC 238041 29 100.0 38 ............................. ATATTTTATAACGCAAAAGGAGACGGAAAACGACCTGC 237974 29 100.0 36 ............................. CAATGAAATTAAGTTTGTCTAAGCTGTCATTTTCGT 237909 29 100.0 36 ............................. AAAAAAGACAGGTTCAATGTATACGATGAAGTTAAG 237844 29 100.0 36 ............................. ACAATCGGATTTAGTGATATTGTGAGGTTGGATTTA 237779 29 100.0 34 ............................. ATTAGAATTGAGTGATCTTTTCAATATTCCGATG 237716 29 100.0 35 ............................. AAACTTGTGCTTAAGGTGCTTTTTAAAGTTTCTTC 237652 29 100.0 35 ............................. GCAAAATTCATACCCTTACTAAGCGTTGTATTAGG 237588 29 100.0 34 ............................. AAACGAGATTCGGAACACTAGTTGTTTCTTTGTC 237525 29 100.0 36 ............................. TTGAAGTAAGCATTGAGAAAACCTAATCCCCCATCG 237460 29 100.0 35 ............................. CTGTTTTTACATACTTGAACAAACAGCTCGAACTC 237396 29 96.6 0 .......C..................... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCACTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAACAGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGAGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAGATTTGATAAAACAACTAATTGAGCAAAATAAACCGGTTTTCGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTCCACTGAACTATCATTTTTTCCAGAGCGAGTAGATGTTTTTCACTGGCATCAAGAGACTTTTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //