Array 1 147633-148691 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMWU01000029.1 Bifidobacterium margollesii strain Uis1B Contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 147633 36 97.2 38 ..........G......................... AACACGCGGTGAACGCGAGATTGAACGGGTCGCACGCC 147707 36 100.0 36 .................................... CCGGTTCGAGGATCTGCAAAAGGGCGACGTGACCGT 147779 36 100.0 35 .................................... CGTGGTGGTCTTGCCGGTGCCGCCCTTGCCGTTGA 147850 36 100.0 36 .................................... CAGCCACGCGTCGAGAGCCTCGGGGCGGTATCTCAC 147922 36 100.0 36 .................................... GCCTAAATCGCTGTAGAGTCCGTAATTGACCGTTCG 147994 36 100.0 37 .................................... CCCTGAAATCAAGAGAGCTATCACAGATCGACCACAG 148067 36 100.0 38 .................................... CGGAGACCCGTCGTCTGCTGGCCGAGGATCCACTGCAA 148141 36 100.0 38 .................................... GTGGGCTTGGGCTTCGAAGAGGCGCCGTTCCACCGCAG 148215 36 100.0 36 .................................... CTTCGACCTGATCATCCACTGTCCGGACCCGCTCAA 148287 36 100.0 38 .................................... GAGATGGGTCTGAAGACCCTCATCCGCCGCAGCTTCAA 148361 36 100.0 38 .................................... GAGATGGGTCTGAAGACCCTCATCCGCCGCAGCTTCAA 148435 36 100.0 38 .................................... ATCGAACGAAGCTCCTATCTTGAGGGAGATTTCGACTT 148509 36 100.0 39 .................................... GCCCATGAACCCCTCGAAACGGAACGTCATGGCGTCCAA 148584 36 100.0 36 .................................... CCATCAGCGTCCCTCCTTGAGTTTGATGGAGTCCAA 148656 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 99.8 37 TCCTCAATGAAGCTCTAGAGCTAAGGCTCTAGAGAT # Left flank : GGCGAGCTCGTCGTCGGTGAGGAGCCCAGCACGGCCGAGCGCTCGAGCGTGGGCACGAGAGCCGGCGATATCGTCGTCGGCCAGACGCCAGTCGAACTGGGTGGACTTGCTCAGCCGAGCCAGTTCGGGCGACGGGCCGGACGTGAAGCGGCCGCCCCATAGGGCGAGGTGTTCGGACTGCTGGTTGGATTCGGTCATGAGAGTGCAGCTCCTTGTTTATGGAATGCGTAAAAATCGCTGTTGTTCAGGGTATCAGCGCGGTCCAACAACGTGGGTTGGCTGGGTCTTGGTGAGTCTTCTGTGGCTCTCGTTGGTTCACTCTTTTCGAGGTCTCAAAAAGAGTGAATTGGAAACGAACATTTAAGCACAGTCCAGCGCGATTTCAACGATGAACCGAACAGCATTCATGTTACCCCGAACAACAAATAATTCACTCTTTCACCAACGCCAAAAAGAGTGAATCATTTCCCCTCTTTTCAACCTTTCAATCGAGCACAAAT # Right flank : ACTGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGCTCTAGAGCTAAGGCTCTAGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 120155-121273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMWU01000015.1 Bifidobacterium margollesii strain Uis1B Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 120155 36 100.0 36 .................................... CTCCAGACTGAACCATGCCAGGTCGATTCACTGCAG 120227 36 100.0 34 .................................... CGAACAGGGTGCGAAGGCACGCGGCAAGGGCGAA 120297 36 100.0 38 .................................... GCGATGAGGGGGACTCGGGCGACGTTGCGCGCGATGAA 120371 36 100.0 35 .................................... CGGTTGTTGGTGAAGGCCCAGAGGCTCGGGCTGGT 120442 36 100.0 36 .................................... GGTGAAAAATGGGCCTTTTTGCCATGTAAAAAAGGT 120514 36 100.0 36 .................................... GAGGTGGACGGGGACCGGCTCCTCATCACGCACGTC 120586 36 100.0 36 .................................... TCCTTCGCCATCGGGTCGGACGGCAACACCTACGCA 120658 36 100.0 39 .................................... CGGCGCGTGCTGGCGGAACTGTCGGAACTGGTGAACGAC 120733 36 100.0 36 .................................... GACATCACCGTGATAGACCCCGGCTATGAGACCGAG 120805 36 100.0 35 .................................... GAGCCCGGAACGCCGCCCACCCTCGAAGGCTGAAG 120876 36 100.0 36 .................................... GTCGCAGTACGCATACCCGTCCGGATGCCGTTCCAG 120948 36 100.0 36 .................................... GGGCTCGACCCGGACCGTGAGCTGGCGAAGTTCGTC 121020 36 97.2 35 .G.................................. TGAAATACCCTTTGCGGAATGCCTGATGGTAACTT 121091 36 100.0 36 .................................... CTGCAGTCCTACTACGATCCCGCATCCACACCCGTC 121163 36 100.0 39 .................................... GGGGACGGGCTTACCGTGCTGCGCACGCCGGGCAAACGG 121238 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 99.8 36 ATCTCTAGAGCCTTAGCTCTAGAGCTTCATTGAGGA # Left flank : ATGATGTACGAAGATCGCGTATCGCCAAAATTCTGCAGAGTCATGGCGAGAGGCTGCAGTACAGTGTGTTTCTGATTCGAATACGACCTTCAAAATTGCTGAAGATCAAGGTATTGGTGGAGGATGAAATTGATTCCTCTGTTGATTCAATACTGATATGCGATCTCGGATCCAGTGATCGTGAAAAACAGTCCATGACCTTTATCGGCAGACGCGGATATCGAGATACTGTGATTCCCATGATTGTCTGAGAATTAAGACTAGTGACGTTTCGCTTTGGTGCGATAGAAACTTGATAATTGCAAAGCGTGCGATTCGTTGCTGAGGAATCGGTTGCGAGGGCTGAATCATCTCTGATTTCGTAGCTTACCTTTCGCGGTTGCTGTTCTGGGCCTGAAAATATGTTGCGGACTAAGTGGACGGTTCGAAGCCTGTTCTTTTCTGGAGCCCTCGCAGCTCCTCGGATGACAGCAAGTATGCTAACGTGGTTAAGGCCCACC # Right flank : CAGCCATAGCACATCGTCTACCGACTCATCTATCAGATCTCTAGAGCCTTAGCTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCTAGAGCCTTAGCTCTAGAGCTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2267-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMWU01000080.1 Bifidobacterium margollesii strain Uis1B Contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2266 36 100.0 38 .................................... CGGAGACCCGTCGTCTGCTGGCCGAGGATCCACTGCAA 2192 36 100.0 38 .................................... GTGGGCTTGGGCTTCGAAGAGGCGCCGTTCCACCGCAG 2118 36 100.0 36 .................................... CTTCGACCTGATCATCCACTGTCCGGACCCGCTCAA 2046 36 100.0 38 .................................... GAGATGGGTCTGAAGACCCTCATCCGCCGCAGCTTCAA 1972 36 100.0 38 .................................... GAGATGGGTCTGAAGACCCTCATCCGCCGCAGCTTCAA 1898 36 100.0 38 .................................... ATCGAACGAAGCTCCTATCTTGAGGGAGATTTCGACTT 1824 36 100.0 39 .................................... GCCCATGAACCCCTCGAAACGGAACGTCATGGCGTCCAA 1749 36 100.0 36 .................................... CCATCAGCGTCCCTCCTTGAGTTTGATGGAGTCCAA 1677 36 100.0 37 .................................... ACTGGAAAAAATCCCCCACCATTCAATCACAAGTGAG 1604 36 100.0 36 .................................... CAATCCGTGTGGAGGTGAAATCTTCTTTGATGTCAC 1532 36 100.0 36 .................................... CTGCGCGTCCTTGGGGCTGAACCCGCTCATGGCCTT 1460 36 100.0 37 .................................... AACCGGTCTTCGCCGGGGTGCGTTCCGCCACGGTCTG 1387 36 100.0 37 .................................... AACGCACCCGCATCCGCCACGTCATCAAGAACGACGA 1314 36 100.0 36 .................................... CGCCACACGCCATTCGATATTGCCCACAGTCCCCTG 1242 36 100.0 36 .................................... TACCGCGTAACCACGCGAGTTATGCAGTTGTTTCGC 1170 36 100.0 35 .................................... TGGGTCTGTGCTTGCCGTCAGTATCCGGTGATGTG 1099 36 100.0 35 .................................... CAGCAGATCCAGCACTTGGAGGCCGTGCAGGCGAA 1028 36 100.0 38 .................................... CATGCGTCCTCCTTGCTGTCCTTGGGCGTCTGCGTCTT 954 36 100.0 37 .................................... GTCATCTCTCCATGTCGTGCCGACGTCATCACGTCGG 881 36 100.0 35 .................................... CATAGGTAGGCGGGCATGGGGTAGCCGGCGTGGCG 810 36 100.0 36 .................................... CCGGCGAACTCCTCGGCAACCGGCAATATGCGATTC 738 36 100.0 38 .................................... GTCAGTCCTGTGAAGTCGGCCCGGCCGCGCACCTTGTA 664 36 100.0 36 .................................... CTGATAGATGAGTCGGTAGACGATGTGCTATGGCTG 592 36 100.0 39 .................................... CCGTTTGCCCGGCGTGCGCAGCACGGTAAGCCCGTCCCC 517 36 100.0 36 .................................... GACGGGTGTGGATGCGGGATCGTAGTAGGACTGCAG 445 36 100.0 35 .................................... AAGTTACCATCAGGCATTCCGCAAAGGGTATTTCA 374 36 97.2 36 ..................................C. GACGAACTTCGCCAGCTCACGGTCCGGGTCGAGCCC 302 36 100.0 36 .................................... CTGGAACGGCATCCGGACGGGTATGCGTACTGCGAC 230 36 100.0 35 .................................... CTTCAGCCTTCGAGGGTGGGCGGCGTTCCGGGCTC 159 36 100.0 36 .................................... CTCGGTCTCATAGCCGGGGTCTATCACGGTGATGTC 87 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 31 36 99.9 37 TCCTCAATGAAGCTCTAGAGCTAAGGCTCTAGAGAT # Left flank : AGAGCTAAGGCTCTAGAGATCGTGGTGGTCTTGCCGGTGCCGCCCTTGCCGTTGATCCTCAATGAAGCTCTAGAGCTAAGGCTCTAGAGATCAGCCACGCGTCGAGAGCCTCGGGGCGGTACCTCACTCCTCAATGAAGCTCTAGAGCTACGGCTCTAGAGATGCCTAAATCGCTGTAGAGTCCGTANTTGACCGTTCGTCNTCAATGAAGCTCTAGAGCTAAGGCTCTAGAGATCNCTGAAATCAAGAGAGCTATCACAGATCGACCACA # Right flank : TGTCGTTCACCAGTTCCGACAGTTCCGCCAGCACGCGCCGTCCTCAATGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGCTCTAGAGCTAAGGCTCTAGAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //