Array 1 156451-155263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVGI010000002.1 Citrobacter farmeri strain CB00120 CB00120_c0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156450 29 100.0 32 ............................. CCCCTCCCTTTTTTAGTTGATCATTTCCTTTC 156389 29 100.0 32 ............................. CCCCGCCTTAAACTGGTTGCTCTGGCCTTTTG 156328 29 100.0 32 ............................. AATTTTGCCAACAACACCATCGTTTACGTGGC 156267 29 100.0 32 ............................. TCGATTAGCGCCAGCGGACACCAGTCCCCTTC 156206 29 100.0 32 ............................. AATTTCGCGGAGTTCCCTGTGCTGGAAAAAAT 156145 29 100.0 32 ............................. CCTGTTATCTCTCCACAACTTGATCCTCGTGT 156084 29 100.0 32 ............................. TTTCTGGCGCCGCCGTTCTCCGTTCTGAATGC 156023 29 100.0 32 ............................. TAATTTACTGCGTGACCTGAAATCCAACCTGC 155962 29 100.0 32 ............................. GTACTGATCAACTTCCGGCCCACGGTTAGACC 155901 29 100.0 32 ............................. GTTCTCTGTCAGTAGTGATCGACGATGAAAAC 155840 29 100.0 32 ............................. CGGCATTACTACAGCATAGCGCCGAAATTTTT 155779 29 100.0 32 ............................. GAAAACCGACTCAACCAAGTTTTACGCTCCCC 155718 29 100.0 32 ............................. CAACGCGTTTCACGTTCAGCTCCATTGCCGAT 155657 29 100.0 32 ............................. CACCCGTACATGTTTGGTGCTGGATATAACAG 155596 29 96.6 32 .C........................... TCACCGCCCATCACGCGCTTCACGGCGGCGGG 155535 29 96.6 32 .C........................... CTCATTCCTGATTGATGATTCAGAGTTGGACG 155474 29 96.6 32 .............T............... CGGTTATCCCGCAGCATCGACAGCGACCGGGC 155413 29 100.0 31 ............................. TGCTCGAGTGGATTCAGGATTGTGCCGATTA 155353 29 96.6 32 ............T................ ATCGGGGAAGTGAGAGGTGGGACGTGGCTTTT C [155351] 155291 29 75.9 0 A.......T..CT...T.........T.A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTTGCCGCGGGGGAAATCCAGCCACCAGCACCGCCGAAAGACGCACAGCCTGTCGCTATCCCGCTCCCTGTATCTCTCGGTGATGCGGGACACAGGAGCAGTTAACAATGAGCATGCTGGTTGTTGTCACTGAGAGTGTTCCTCCACGTTTGCGCGGAAGGCTGGCCGTCTGGTTGCTGGAGATTCGGGCAGGTGTCTATGTGGGGGAGGTTTCGACGAGGATACGCGAAATGATATGGGAACAAATTTCGGGCCTGGCGGAAGATGGCAATGTCGTGATGGCATGGGCGACCAACACGGAATCAGGATTTGAGTTTCAGACTTACGGCGAAAACAGACGCGTTCCGGTAGATTTGGATGGGCTACGGTTGGTTTCTTTTTTCCCCATTGAAAATCAATAAATTGCTTGTTCTTTAATAATACGGAATTGTTTACAACAAGTTGGTAGATTGTTGATGTTGAAGAATGTTTTTGATTTTTAAGTGTATTTTTTTAGA # Right flank : AAATCGTGATGGTGTTCCTCATTGCATCAGATAAAAATCTGAAAATATTATCCCGTGCTGTTTTATTAATTTCTTTGTTTTACCCTTGGTGACGTTATTGCCGGAGGCAGTGACGTCACTATAAAACTGAGGGATTAAATAGATGAAAAAGACTTTTTTGGCTGCGGTACTGACTCTGGTATCTGGTTCTTCTTTTGCTGCAATTACTGATACTTGCCAGCAATACTTTGATGATGTTGATGCGTTGATTGTTCAGGCATCCAAAACCAGCGATCAGGCTAAACAGCAGATGGAAGCCATGAAACCTCAACTTGAGGAGGCCAAGAAACAACTCGCAGGATTACCGGCTGAAAGTCAGGATGCTGGCTGCAAACAAGGTGCTGCCGCGCTGGTGCAAATGAAGCAGTCCATGGGCATTCAATAATTTATTATAAGAAAACGCGTCATTGAATAAACGACGCTCAGAATAGTGTCACCCTTCGCGTCTTTTGCCAGAAAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182088-180716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVGI010000002.1 Citrobacter farmeri strain CB00120 CB00120_c0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182087 29 100.0 32 ............................. CATGTCCTGGCGTTCTTTGCTGTCCCAGTTGT 182026 29 100.0 32 ............................. CGTTCAGGAACTTGTTTTGCAGATTAGTCGCC 181965 29 100.0 32 ............................. CTCGCGTGCCGTGTGCCACGCCGGATCGCTGC 181904 29 100.0 32 ............................. TAGGTACAATTCGAGAGTCGCTTGAAATGACG 181843 29 100.0 32 ............................. CCAGCAGCAATTAGATTTCTCAGCCAGGCGGC 181782 29 100.0 32 ............................. ATTAAACACCCAGCTATCCCTTGCTGCTCTGG 181721 29 100.0 32 ............................. CCGGACGCGGCTGATAACTCCTAAAACTACTT 181660 29 100.0 32 ............................. GCTCCTTTTTTATTGCTGGCATTCACCATCAA 181599 28 96.6 32 .....-....................... AACAGTGTTAGGAGTGTTGAGGGTAGCGCCAA 181539 29 100.0 32 ............................. GTCATTCATTGTCAGCGCTTCAGCGTGAGCGC 181478 29 100.0 32 ............................. TGACGGTCGAGATAGTTAATCGTCGACGCAGC 181417 29 100.0 32 ............................. AAAAAACAGGCTGACGCAGACGCGGCGCTGCA 181356 29 100.0 32 ............................. ATTACACATCCCGCCTAGTGGATCAGAAATGG 181295 29 100.0 32 ............................. AGATCGCCGCCGCCACCAAATACCTCATTTCA 181234 29 100.0 32 ............................. AGATCGCCGCCGCCACCAAATACCTCATTTCA 181173 29 100.0 32 ............................. ATGGCGGCCATCAATCTACATGCCGCGCTGGG 181112 29 100.0 32 ............................. CGTAGCAGACATGATCCGCGATTTGAGTATCG 181051 29 100.0 32 ............................. GGATATGACGTGGCAACAGTACGCAGTAGCGT 180990 29 100.0 32 ............................. CGAATTTATACGGAATCGGAATTCGAGCGCCG 180929 29 100.0 32 ............................. ATTGAACCTGATTGCAACCACGACGGCCAGGC 180868 29 96.6 32 ............T................ GGTTTAATTGTCAAGATGAATGTTTGTGACGG 180807 29 89.7 32 .........A...TT.............. ATCTGTGTTGTCCCTGGCACCTGGTTATTGTC 180746 29 75.9 0 .........A.T.GCA..........A.A | AA [180722] ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGCCAGATAGAGACCAGCGGTACGCACGAAGTGCGCTGCACACCCAATACCTGGGTGACCGTTTCTCCGAAGGTGAACATGCGTGGTGGTTATGACGTTCTGTCACAGGCGCTGGAACGCGCAAATGAGATCAAACATCCGGTTGGGCGCGTACGTGATATTGAAGCGCTGGACGAACTGCTTGCCACGCTGAGCGACGACAAACCGCGGGTGATTGCGCTGCAACCTATCAGTCAGAAAGAAGATGCCACACGCCTGTGCATCGAAACCTGCATTGCGCGCAACTGGCGCCTGTCGATGCAAACACACAAGTATCTGAATATTGCCTGACATGATTAACTTTCAGTCGCGATTTAATCGGTAGAATGCGATAGAGGTTACAGTTCCTTTTTCTCTATTCCTTAAAATCAATGAGTTACTGCTCATTGTCAATCTGGATAGAATCGGTAGAAATTGAGAGTGTTTAAAAATATCCCATATTCAATGGGTTGTATTTAGA # Right flank : ACCAAAACCGTCATCCATTCAGGTGGATGACGGTTTTATGCTATTAAGCGCCTGTTTCAGGTTCAGACTGGAGATGGAAACGCTGCATAAGCTGGCTGCCTTTCCAGCCATACCATCCTACATAAGCGAAACAGACCACGGGGATCGCATAGGCGAGTTCGACGGACATTTCGCGGGCGACCAGCCCCATCAGCAGAGGGATTGCGGACGCGCCAATAACGGCCATAATCTGCAGTGACGTCCCGCGTTTCGTTTTTTCACCGAGATCTTTCAGGCCCAGCGCCATTGTGGTTGGCGACATAATCGACATAAAGATAAAGGTGGCAATCAGCGCGATAATCGAGACGTAAGGAATACCGATGACAACCAGAGCGGAAAGCACCACGTTGATTAAGCCGTAAATACCCAGCAGGCGATGAGGCGAAATCCAGCGCATCAGCACCGTGCTGATGAAGCGACCTGCCATGAAGCCTGCCAGCGCGATGGATAAAAACACCGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //