Array 1 43759-45251 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWC01000067.1 Escherichia coli strain AF7658-2 contig_0068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43759 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 43820 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 43881 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 43942 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44003 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44064 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44125 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44186 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 44247 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44308 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 44369 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44430 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44491 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44552 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44613 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44674 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44735 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44796 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 44857 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44918 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44979 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45040 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45101 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 45162 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45223 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TATTACGCGCCAGCAATGCTGACAGCGGCAAAGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15529-16106 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIWC01000048.1 Escherichia coli strain AF7658-2 contig_0048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15529 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 15590 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 15651 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 15712 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 15773 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 15834 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 15895 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 15956 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 16017 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 16078 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //