Array 1 9131-5156 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000200.1 Brasilonema sp. UFV-L1 scaffold200_cov13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 9130 37 100.0 35 ..................................... AATATATAAGAGTAACACAAGGAGAGAAAACGATG 9058 37 100.0 38 ..................................... CTCTTCTTTTTGAAAGAAACCTAATTGAAATCCATTTC 8983 37 100.0 40 ..................................... GTCTCATGATAATCTTGTACAAATTAGTTGGATAAGGAGT 8906 37 100.0 40 ..................................... TTCATTGGCGACTTACGCTTTGATGGCATTCGCATAATTG 8829 37 100.0 34 ..................................... GCGCAAGGCTCATCGAAACCGACAGCTAACACAA 8758 37 100.0 34 ..................................... TGGCGGATTTCCTGGTGTGCAATGGCGACGACGG 8687 37 100.0 35 ..................................... GAGATACTTTCCAGAACCCGTTGAAATCCTTTAAA 8615 37 100.0 35 ..................................... CAAGTTCAATGCCAATTGATAAGTGTTTTTCATTT 8543 37 100.0 37 ..................................... AATAATTTCTTGAGGTACAGATACTGAAGACATAGGA 8469 37 100.0 33 ..................................... TGTTCCAACTGGAGTATCTTCTGCTGGTGCTGT 8399 37 100.0 37 ..................................... TTAGAGTCTTTAATCTCAGTTCTCAAAGTTGCAATAG 8325 37 100.0 32 ..................................... GTGCGATCGTCTTTATATCATTCTGATTTACC 8256 37 100.0 40 ..................................... TCCTTCCTTGTGGATTACTCGATAATCCCCTAATGGCAAT 8179 37 100.0 38 ..................................... TCCTGAGTATGCCGCAGCAACAAAGAAAGAAATAATTC 8104 37 100.0 35 ..................................... AAGCAATTCTTGCGCTGATCCTTGCGGTTTGGTGG 8032 37 100.0 37 ..................................... TCAGATTTGTGCAATTCTTCTACTGATTTTTCCGGAA 7958 37 100.0 37 ..................................... TATAGAGTAGTGTTCTAGAAGTGAAAGTCTTACGGTA 7884 37 100.0 36 ..................................... GCGAAAGTCTTCTATTGCAGTCTGTGGCAAATAGTA 7811 37 100.0 38 ..................................... GAGAAAATCTGGAAGTCGATGGAATTTGAATGAGGAGG 7736 37 100.0 34 ..................................... ATCGGAGGAGCAATTAGAACTTCACGAGAGAGAA 7665 37 100.0 39 ..................................... TCTGAAGATTTGTTTCTTCAAAGGAAAAGAGACAAGCTT 7589 37 100.0 37 ..................................... CCTCCATAGTTGCACCCCTCACCTCGATAAATCAACC 7515 37 100.0 37 ..................................... CTAATATTGATCCTCCAGATATCGTTGCGGGTGTGGG 7441 37 100.0 35 ..................................... CTTCAAGTTGATAATGCCATCTGCAACAGTCCCGA 7369 37 100.0 34 ..................................... CAATTAATCCATGAGCAAAAGTAGTATTTGCACC 7298 37 100.0 32 ..................................... AGCCGTTCTTGTATCGCTTTCGACTGGGATAG 7229 37 100.0 38 ..................................... ACCAATCCAAGTACCACCCACTGCAAACTTGGCTTGAT 7154 37 100.0 35 ..................................... GTTAATGGCAAGCGCAAAGATATGATTCATCAGTG 7082 37 100.0 36 ..................................... TCAAATTAATCGTCCCATCGACTGTTTAGAGGGAAA 7009 37 100.0 35 ..................................... TTGTGAACGTTCCATCAACTTTTTAATAGCCTCAG 6937 37 100.0 34 ..................................... TGATGAATTTCTAATCCATACTTCCTCATTGTTG 6866 37 100.0 36 ..................................... AAGAGATGTGGTATTTACTTTTCTCTATGCTTGAGG 6793 37 100.0 32 ..................................... TTTCTATTGGAGTTTGATAGGCATTCAAGTAG 6724 37 100.0 36 ..................................... CGCATTTTGGCAAATGTTTGCTGCGGACAATCCCTG 6651 37 100.0 38 ..................................... GCTTTTCATTACTTTTTATTTATTTTTTTTACGTAGGC 6576 37 100.0 37 ..................................... TTGTGCAGTGCGATCATTGTTCGAGTGGAGCAATGTT 6502 37 100.0 38 ..................................... ACGGTGTCTAGAACGAATACAAAATTAGACATTTTGTC 6427 37 100.0 37 ..................................... AAGATAAAATGTGCGTACCTGTTCGCAGAGTTCTGAT 6353 37 100.0 35 ..................................... TATCAGAATTTGTAGATACGTACCAATCTCTGACC 6281 37 100.0 35 ..................................... ATAAGTTCTACCTCCCTCTCAGTGAACACTATTTG 6209 37 100.0 33 ..................................... TTATTCCACTTTTTAAAAGTTCTATCGTTCTCG 6139 37 100.0 32 ..................................... TTCAGTTATTCCAACCAGTGCTCCAAAATGGG 6070 37 100.0 36 ..................................... GTGACGATCTCGCAACTGCCGTGCGAAAAGCGGTCG 5997 37 100.0 36 ..................................... GGAATAAGCTGAACTACAGCGTCTTTTACCTGAGAT 5924 37 100.0 45 ..................................... TGGAATTGCCCTTGCACTGGGGGCTGGCTTAGCAACAGCGATCGC 5842 37 100.0 37 ..................................... TGCCAGCCCTGGAAACTTTCAACCAAGTGAAGATGTT 5768 37 100.0 33 ..................................... CAAACTTTCTCGCCCTTATCATTAAGGTGCGAC 5698 37 100.0 33 ..................................... AGATTCGACACAGTATTTGTTGCAGTTACTGTC 5628 37 100.0 35 ..................................... TTGCCTGTTTCTTGCTATAGCGCCCTTCTGTGCTT 5556 37 100.0 35 ..................................... AGAAATGGTAAAATTCCGGAGCTATGACCGAACGA 5484 37 100.0 35 ..................................... GCGGTTGTTGGAGGGTGCGATCGCCATTTCTAAGG 5412 37 100.0 36 ..................................... CGAAGTATTGAAGCAGAAGAAAGCGATACTTGTTCT 5339 37 100.0 39 ..................................... CACGTTTCTGGAGAACCCAGAGGAAGAACTTACCCTGTA 5263 37 100.0 34 ..................................... TTCAGGTTCAAGCTCGCAACTGGATAAGCAAGCG 5192 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 55 37 100.0 36 GTTGAAATTTCTCTTTCTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTGTCCTACGATATCTCTGAAGATAAGCGCCGTACAAAGATTCACAAAGTCCTCAAATCATATGGGCAGTGGGTGCAGTATAGTGTATTTGAGTGCCAGCTAACTGATACTCAATATGCAAAATTGCGATCGCGCTTGCATAAACTCATCAAGCCTGATACTGATAGTATCAAATTTTATTTTCTGTGCGCCTGCTGTTTTGGTAAAGTCGAACGTATCGGCGGCGAACCACCTCGCGATGACACGATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTTGGAAAAGAGGTTTTTAAAAAAATGGCTGAACTTCTGACAGTACAAGGCTTTACAGGAATATTAGCTCAAAAGCCATCCGCGCTCCTTGTCTAGACTGAATTTCAGCCATTCACCTGTCAATCAATTTACTTTTTTCTATGCTATCATTAGTTCATTCGCGATTTAGAACCTTGAAAACTTTATACGGGGCACTTCTCTGGCTTTCGCA # Right flank : AGCGCAAATAATTGATAGGCGATCGCCATCAAAATGTTGAAATTTATCTTACTCCCTTCGGTTGTGTAAGATTACTTACAGCACATTGCAAGTAAATGAAGTACAGTACTGAGGTCTAAAAGGCAGACAGAAAGACCTTTTTGCTTCTGACTCCTGACTCCTGAATTCTGCTGTATCAAACGAAGTGTCTTTTCTCTGCGTTCTGAAGCGCCTCTGCGGTTAAAAAATACAGCACATTGCAAGTCAATGAAGTACAACGCTGTTGTTTAAAAGCCAGACTCTAAGCCTTTTTTACTTCTGACTTCTGACTTCTGCTATAGGTATTCTTCCGGCGGGAAGAGAGTAACTCACAGAAAATTTCAACATTTTCCGAAATAGACAGACTAAAGATTGTAGTCGTCGTTAGAACAAGTACAAACAATCATAAACCTAACATGTTGAACTTCAAAAAGTATACTGCATTGCTTGCTTTGTTACCAATATTTCTTACCATTTGGACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTTCTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 63396-59159 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000022.1 Brasilonema sp. UFV-L1 scaffold22_cov14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 63395 36 100.0 41 .................................... TTGTAGTAGCTTTAGGAGCAGACTGTGCGAAGACAGAAGAA 63318 36 100.0 36 .................................... CTAGATTGAGGCATAGTAATCAATTCCTAAATTAAC 63246 36 100.0 37 .................................... ATAGCAGTAGCTAGGTCTTGGTTAGCAACAGTTGCCA 63173 36 100.0 34 .................................... ATTCCTGCACTTACCGTTGCACCATTCTGGGTTA 63103 36 100.0 36 .................................... GTTACAGGTCAAGAAAAACCGAATTGTAATTGATTT 63031 36 100.0 38 .................................... GAAATGAGAACAACGCCGGAAATAAACAAGGAAGCAGC 62957 36 100.0 40 .................................... ACTCACGCTAGAAGATTGATCAGCATCACTGAAGTTGCTT 62881 36 100.0 36 .................................... TGTCTGTTGTCGTAGTTGTTCAGCTGTTCCGTGGTA 62809 36 100.0 36 .................................... CTCAGGGCTCTCTTCTACTTTCTTATTGTCCCAAGT 62737 36 100.0 38 .................................... GTCATCACTACGCTGCCTGTTGCTATCAGTTTTGTCAC 62663 36 100.0 32 .................................... CTTACTCTCGGCATCACGAGGTTTAAATACCC 62595 36 100.0 42 .................................... TCCCTTTCAGCAGTATACTGCCATGCTGATTCAGCGCTAGCA 62517 36 100.0 40 .................................... GGTTCTCCAAAGTAAGACCTTTTTGGTAGGGACATTTTTG 62441 36 100.0 35 .................................... TTCTGTTGCTGGATAGAAGAACGACGATTTAAAAC 62370 36 100.0 41 .................................... GAATCCCAAATGCCTACGGCTTTTTTTAGGCTTGATTGCCT 62293 36 100.0 39 .................................... AATTCATTTTGTAACTTAGTTACAACTTCGTTAGGAGAA 62218 36 100.0 35 .................................... TTTGGAGGTGTTTCCTCTGCAAGAACTTGAGTTAT 62147 36 100.0 39 .................................... CTTCTAGAAGCGGTTTCCGACCTCGACGATCATTCTCGC 62072 36 100.0 39 .................................... AGAATTCAAAGAAGAAAGTTCTTGGCTATTGGCAAAAGA 61997 36 100.0 42 .................................... CGCTCAGTTTAAAGAACTTGGGTATATAGCGTGCCAGAAGCG 61919 36 100.0 39 .................................... TTACACTTATCTCCCCGACAAATCTCTACTGTACCGCGA 61844 36 100.0 35 .................................... TTAAAGAAATTAACTCAACGATTTCGCCGGTTTGA 61773 36 100.0 35 .................................... GTTAGCCCATTAACGTTTGAGCAAGCGTTGCTGTC 61702 36 100.0 35 .................................... TTTAAATCATGCCTGTTTAGCCACTCCTCGGTAAC 61631 36 100.0 39 .................................... TATGGGAGAAAGCTGTAAATAGAGAAGTAGCAATAGTAA 61556 36 100.0 42 .................................... AGGCTAAAACTCCGTCAACTGAACCAGCTGCAACGATAAAGT 61478 36 100.0 38 .................................... ATTCAAAGTAACCCAGAATGGTGTGCAGTTAATTGGTA 61404 36 100.0 40 .................................... GAATCGCTTCCCATTTTTCCCCAGTATTCTTAGTTAACTC 61328 36 100.0 41 .................................... TACCTCTTGAGCCAGGCAAACTAGAATCAAACTCAACTTCT 61251 36 100.0 36 .................................... GAAGTTAAGCGATACGGACGACTTCTTGTACTACAA 61179 36 100.0 37 .................................... TTTAGGATAACCCCCTACCCAATACTGAGGAGTGATG 61106 36 100.0 44 .................................... GGGAACGTGAATCGCTTCCCACTTTTCTCCGGTTTCTTTAAGTA 61026 36 100.0 38 .................................... CGTCTCCTTCAGGCACGGGGTCGTGCCCAGTGAAAACA 60952 36 100.0 37 .................................... CTCTTGCGATACTGGTTTAGATTTTTGATCAGCAAGA 60879 36 100.0 41 .................................... ATAGCGATGAAAGAGGTAGCAAAAAGAGCTTTTTTCAAACT 60802 36 100.0 39 .................................... CGTTAACATGGGTGTTTCTCCTTTTGTATTGGTATACCC 60727 36 100.0 32 .................................... TCTTCAGGCAATCGTTTGCCTAGGACTCCCTT 60659 36 100.0 36 .................................... AAGTAGGTTCCAATAATCTCTTTCTTTTGCTCATTT 60587 36 100.0 36 .................................... GCTAGTACATGTCTCAACTATAATTTTTTCTCCTGC 60515 36 100.0 44 .................................... CTTAATCTTACAACATGAACTAATTGTTGTCTAACACATTACCA 60435 36 100.0 40 .................................... GTTTTTACCAAAAGAATTCTATCTTTGTTTTTTTGCACCA 60359 36 100.0 41 .................................... CTGACGTGTTTGAACGTCAGGATCGTTTTGGTTTACTGTCT 60282 36 100.0 38 .................................... CTATAATTGTCACAAGTGCTAACACACTTATGATAGTA 60208 36 100.0 34 .................................... TTTTTCTTCAGGCTGTTCGGCAAAAAAAACAATT 60138 36 100.0 33 .................................... TTTTTGTGTCGGTTTTTTCTTCTTTTTTTGCCG 60069 36 100.0 37 .................................... AAAGAAATACACAAAACAAAAGCGGAAATTACTGCCT 59996 36 100.0 35 .................................... TTCTTTTCCTTCACGAGTAACAGCGATTATGCCGC 59925 36 100.0 38 .................................... AAGCTCATCTTGCGTAAATGCATCATCTGTTCCTGCAA 59851 36 100.0 38 .................................... TCTGTATAGTTTTCTCGTATAGTGAAGTTAATTAACTG 59777 36 100.0 36 .................................... GTTTATAGGGTCAAAGGCAGCTGCGTTTTTTCCATT 59705 36 100.0 36 .................................... AACAGGATTAGCGTTTGCGAAGTTAGACATAATGAC 59633 36 100.0 38 .................................... ATTAAAGAGCATCTGGCTGATTGCCGCTTCATTTAATG 59559 36 100.0 38 .................................... GATTAGCGATAGCGCTGTTTGTATGGGAGAAAGCTGTA 59485 36 100.0 40 .................................... GAGTTATGTTCCCATCTTTATCCTTTTTATAGCAATCTGC 59409 36 100.0 33 .................................... TTTTCAGAGCTTTTACCCTGATCTTCACTACTG 59340 36 100.0 38 .................................... TCTCAAGTTTTACAGGAGACAATAATGCAAGCTCAATT 59266 36 100.0 36 .................................... CAGTAAGACTAGGCTTTGCTTCGTCCCCACCATCTC 59194 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 58 36 100.0 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : TGTTTCATGCTGGTGCTTATTGTGTATGATATTCCTAATGATAAAAGGCGCACGAAGTTATCTAATTTCCTGGAGGGATATGGGCGAAGAGTCCAACTTTCTGTGTTTGAGTGTTTTCTCAGTTTGGAGGAAATGCGAGAACTTCATGAAAAGGTAAAAAAGTTAGTTAAACCTGTGGAGGATAATGTGCGGTTTTACTGGATATCGCAGGAGGCGGTTTCCAGGGTGTTAACAATTGGTGGTGAGTCTCCCCAACCACCGCCAAAGTATTATGTCATCTAGGTTTGGGGAAGATTAGGGGTGATTTTTAGATGGTGCATCGACACCACTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGTGGTGTCGATTGCTTGTAGGGCAAGGATTTGAGGTATGTGTTTTGCTCAATTTCGCACAACATATATAATGTATTTGAGAGTGGTGTCGATTTGGCGGCTGGAACCCTTACTGGGTAAGGGCTGCTAGACGAACC # Right flank : AGTGATTAAAGATGATGTTTTAAAATAAGCTGTAGTTTTATAAGAGAAAGTAAAAAATGGGATTAAAAGAACTTCTCCAAGAAAAACGAGCAGAAATTATCAGTATTGCTGCTAAACATGGTGCTTATAATATCCGAATTTTTGGTAGTGTAGCTAGAGGAGAAGAAACACCAAGCAGTGATATTGATTTTTTGATTGATTATGACTTGAATAAAATTACACCTTGGTTTCCTGGTGGCTTGGTTCAAGAGTTAGAAACTTTGTTGAATCGGAAGGTTGATGTGGTAACTACTAATTCTTTACATTATTTTATTCAAGATCAAGTCTTAAAAGAGGCTATTCCTTTATGAAAGACAGTCGGATTTATCTTATTCACATTCGGGATTGTATCAACAGAATTAAGCAATATACATTTGAAGGTAAAGAAGTATTTTTTAATGATATTAAAACCCAAGATGCAGTTTGAAGAAATATTCAGGTGATGTGTGAGTCTGTACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 7368-3022 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000112.1 Brasilonema sp. UFV-L1 scaffold112_cov14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================================================================================================================================== ================== 7367 37 100.0 37 ..................................... TTCTATGATGTCTTCACTTATTATAGGCTTTACAACC 7293 37 100.0 35 ..................................... TTGGCAATATCATGCAAAAACTGGAAATCAAAAAG 7221 37 100.0 38 ..................................... GAAACTTGAATCATTCCGTGGTGAATGAATCGATGCGC 7146 37 100.0 41 ..................................... TTGAAAAAGGGCGATCGCTTTGAAGAGTAAGTGGAAAGGGC 7068 37 100.0 35 ..................................... AACTTGCTAATAGCGATCGGGGTGGAAGTAAAAAG 6996 37 100.0 36 ..................................... AATGCTTTTTCACCGTGATCAAGGTTGGCGACGCTT 6923 37 100.0 33 ..................................... ATCGTTTGAGGACTCTTGCTCTGAGGACTCTTG 6853 37 100.0 34 ..................................... TAGATGCAGCTTCAAGCCCAATTACTGGAAAAGA 6782 37 100.0 35 ..................................... TTTGTGGGTGATTAAACACCCGTAATCCCATGCTT 6710 37 100.0 34 ..................................... TAATATCACTCCCCAGTACTTGAGGATGTTTCCA 6639 37 100.0 34 ..................................... TCGCTGAGGGGTATGAGACGTTTAAAAAAGAACT 6568 37 100.0 33 ..................................... TGGACATTTACTTTTTTAAGAAGCAATACTTAT 6498 37 100.0 34 ..................................... ATTTTATTTTTGCTAGCAGAAGCGAAAACCAAAG 6427 37 100.0 36 ..................................... ACAAAAATCTGCGATCGCTTGTTTTACCTGAGCAAG 6354 37 100.0 34 ..................................... CTTTAAATTCAGGAGGAATTTGCACCCCTAAATG 6283 37 100.0 43 ..................................... GCGTTCTTTTTCTGCAAGTGCTAGCTTAGTACGCAGAGAAGCG 6203 37 100.0 35 ..................................... GGGTTTGATCTGCTGTAACAGTTGTTGACGATAAA 6131 37 100.0 37 ..................................... GTGGATGAAGAGTATGGCGCTTTAGAACTGCGCTTGC 6057 37 100.0 34 ..................................... GTGCCTTCCACCAACCCCGACCCAACCGAAACCT 5986 37 100.0 34 ..................................... TAGAGGGAAAACTTTTGAACTATCATAATTTGCC 5915 37 100.0 34 ..................................... GCAGTAAAAGCTACTTGAATAGAAGTAGGTGCTG 5844 37 100.0 32 ..................................... CTGTGCTGCGATCGCTGCTTTGAGTGCCGCGA 5775 37 100.0 35 ..................................... TTTTTATCTCTCTAAGATTTGTAAATTCATCTACA 5703 37 100.0 35 ..................................... TAAAAGGTTTAGGTTTATTGACACTTGCATGGTTT 5631 37 100.0 34 ..................................... CATCTATCTTTGTCCACTGTGAAGAAATCTTGCT 5560 37 100.0 35 ..................................... CTGATGAAATTAATTCTTTCAGATTTTTACTGTTG 5488 37 100.0 36 ..................................... AGACTGTTTGGCTAGGTCACCTGGTTGAACATTTGA 5415 37 100.0 41 ..................................... AAGACTAGATGAATTAAGCGAATCTTCAAAAAATGGATGAA 5337 37 100.0 34 ..................................... TGAACTCCCATTTGGCGACTTGTCGGATGACGGG 5266 37 100.0 35 ..................................... GGCGGCTTTAAATGCGATCGCCACCGATGCAGGGA 5194 37 100.0 34 ..................................... GATAGTTGCATTAGCGCTGTAAGTCTTTCACCAG 5123 37 100.0 38 ..................................... ACTGGCGATCGCATCCAATCTACGGAAGTGATGAGCAG 5048 37 100.0 35 ..................................... TTGTTCTATCTATTACTACAGGTCTGGGGCACCAG 4976 37 100.0 36 ..................................... TGAATTATCTCCTCCCGAGACTTTGAAGAGTCCCCA 4903 37 100.0 35 ..................................... TGATTCTAAATAATCATTCAGGCTATTGTATAAAC 4831 37 100.0 38 ..................................... GAGAATAGGAAACTTTCTAGGCTTCGAACGACTAACTG 4756 37 100.0 41 ..................................... TTTATCTTCCCATTGGTAAGAATCTTGATAACATCTCTATC 4678 37 100.0 34 ..................................... GAAATCATGTGTGTTACTGAGTTAGACGGCAAAG 4607 37 100.0 35 ..................................... TCTGTAAAAGTCTAATCTTCTCTCAGCTTCCTCTG 4535 37 100.0 40 ..................................... ATGTCAAACCCTAAGCTGATATCTGACCTCATGGACTACC 4458 37 100.0 37 ..................................... TAGCTCTAAGGAAAGAAGGACCCAATTCAGTTTTAGC 4384 37 100.0 34 ..................................... CTTTATTTCGCCATTAACAATGCCATCTATTGAA 4313 37 100.0 36 ..................................... ATCGTACACACCCAATCTACAGGTTCCCGTTACCTG 4240 37 100.0 34 ..................................... AACAACAAGGGAGATTTTTACAAGACTCTAGATT 4169 37 100.0 33 ..................................... ACTGCCGCTGTGGCACCCCCAATAGAGGTTACT 4099 37 100.0 34 ..................................... AACGGACTGAACAATGAGGAAGGGGAACCTATTG 4028 37 100.0 37 ..................................... GAATCGGAGGAAGAGAAGTAACTCAACAGATGGTGAG 3954 37 100.0 34 ..................................... TTGCATTTCAAGCGCTTTAGCTTGCCGTTCTAAG 3883 37 100.0 34 ..................................... ATTTGATGGTGTTGCTTGCTTAAATGGTTGAATA 3812 37 100.0 34 ..................................... TTATCGGGGCTACTGCCCTTAGTCAAACTGTCTG 3741 37 100.0 34 ..................................... TTCGTTAGCAAAAACTGACAGCCAGTTGCCAATA 3670 37 100.0 35 ..................................... CACCATGTGGCAAGATAACGCATTCAGAATGAATT 3598 37 100.0 37 ..................................... ATATGAGGCTCCTAGAAATCTTCACAACCATACCACA 3524 37 100.0 34 ..................................... TTATAAGAGAATCGCTATCAAAGTTGACTTGTGC 3453 37 100.0 36 ..................................... GCACAAAGGTTTTCTAAGGCGATCGCCACAGAAGTT 3380 37 100.0 37 ..................................... ATTTTACGGATTTACGGCGAGTTCATTATTCTCCAAC 3306 37 100.0 203 ..................................... TACTCGCCAGGGATTAAAAAACCTCTAGAAACGTAGGGTGTCTTATGCCGAAAGAATTGCGCACCTCGAATTGTAAGGTGCGTTACGCTAAAGCGATAACACACCCTACAATTTAGATATGGCAGTCCTAAATCATTCATGAGAAATCAGAAGCCCGGTTTCTTGGGATAAGCGATTTTTACAAATGAAATAGGAGTGCTGTA 3066 37 89.2 0 ..................T.T..........AA.... | ACCCGT,G,G [3047,3057,3062] ========== ====== ====== ====== ===================================== =========================================================================================================================================================================================================== ================== 58 37 99.8 38 GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TCAAAATTCAAAAAAAGAATTCTTAATGAGCGAATTTTGAGATTGCTTCGCTTCACTCGCAACGCTACGCGATGCGTGAATTTGTTAGCGTAGCGTGCCGTAGGCAGCGCAGCGAGTGAGGAGATGGGGAGATGGGGAGGATTCGCGCTTGAGCAAACAGATTAAGCTGACACGGATGGTATGCGATTTGATTTTCTGTGCGTCTGCTGTTTTGGTAAAGTTGAATGTATCAGTGGTGAACAACCTCGCGATGACACAATTTTCCTTGCCGAATGCGCGGATGGGTAGGTGTTGGAAAATAGGTTTTGAAAAAAATGGCTGTATTTCTCACAGCACAAGGCTTTACGGGAATATTCGCTCATCACCCATCCGCGCTCCTTGTCTAGACTGGATTTCAGCGATTTGTCTGTCAATCAATTTAGGTTTTTCATGCTATCATTAGTTCATCCGCGATTTAGAACCTTGAAAACTTTATACGGGGCACTTCTCTGGCTTGCGCA # Right flank : CCCCAAAGTCATAAAATATTCCTGACTTTATAATGCGAAAAAATATAGTTTTATAAAAAAGCTATACCTAATTATGAAAGGAAGAAATTCAATTTTCTCTCAAAAGATTCTCAACAAAGCTATATTATTTGTTTCTTTAACAATAAGGTAAATCCTTATCGTGTCATGATTTGAAACATTTTTTACATTATTCCGTTTTAAACTGAAATTTATCTAAGTTGATAAAAAAATATTTTATGGTTCAAGATAACCGCGCTACGGTGCGAAAGGTTTTAATTATTACCTTACTGCTTAACATCTTTGTCATGGTGCTAAAAGCTGTCGTGGGAAACTTGACTGGTTCTCTGAGTTTGATAGCTGATGCTTTACACAGTGTCACTGATAGCGCCAATAATATATTAGGATTGATTGCCAGTCGCTTTTCTTCACCAAGACCAGATCGTGAACACCCATACGGACATCTAAAATTTGAAGCAGTAGGGGCTTTGGGAATTTCTGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 115701-116913 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000005.1 Brasilonema sp. UFV-L1 scaffold5_cov14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 115701 36 100.0 35 .................................... GCCGCTCCTAGCCAAAACCATAACTGGTTATTTGG 115772 36 100.0 43 .................................... GTCATTCCTAGAGTTCTCTCCAAAATTCCGTCTGGACCAAACA 115851 36 100.0 37 .................................... AAAAGAGAAAGAGGAGACAACAGCGAAAGAAGCGGCA 115924 36 100.0 38 .................................... TTTACTACTACCGCTACCACTTATTTCAATTGGTGGTT 115998 36 100.0 34 .................................... ATCAGGGTTTAGCGACAGCAGGACGAACAGTCTC 116068 36 100.0 36 .................................... CTACAGCTGCTACATGTGCTGCTAAGTCTGCGGCAA 116140 36 100.0 41 .................................... GGCAGTAGTAGGGACAACGATTAAGCCAACAATCACTAAAC 116217 36 100.0 36 .................................... CTAAGTTCTCCTTCTTTAAAATTGCTCGTATTTTGA 116289 36 100.0 42 .................................... GCTTATTAAAGCAAATGCTCAAGACGATAACTCTACAGGTAT 116367 36 100.0 35 .................................... CTTAGGAGCTGTCGTCCTCTCCATATACCAGGCGT 116438 36 100.0 34 .................................... GCTTGAGTGTCGCGATCAAGATTTTTGAACCAGT 116508 36 100.0 42 .................................... CTCTCTGTTAGATGAAGGAGTAGGTTGAGGTTGATTTTGAGA 116586 36 100.0 37 .................................... TTTTTACTAGACAAATGCCATAAGTGATCTGACCTAG 116659 36 100.0 36 .................................... AATTGAGTTCACTTGTCTAATTTTGGTAATTTTATA 116731 36 100.0 39 .................................... TTTTTCAGCAGCATCGGCGGCGGCGGAAAAAGAAATAGC 116806 36 100.0 36 .................................... TTTATAGAGCCTCCTGTTACTTCTTGGCATTTAACT 116878 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 17 36 100.0 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ATTTTGAGATAAAGGTGCATACTCTAGCAGCGGAATAGCCACGTTTAAAAAACTCCCTTCTTACGGAAACTTTACAAATATCCCTGATCATAAGGGTAAAACGGACTACAGTTCTCAGCTTTCTGATAAAATATTACAGTCCTTAACATTAAGATAAAACCTGAAACTATAAGGCTTCCATCTGATGGACGTTACATCACTTTGGCACATTTTGTCTAGATCTATCTTCGATTTGTAGATCAGCTTGCCTGAGATAACCGAGAATTTAGGTAGCTTTAAGCAGGATTTCCATAACGGATTTTAACGCGGTTCGCGTTCATCGACACACCTCTGGAAATCCCCGAAAGCCTATATTTTTCGTCAAGGTGTGTCGATTGATTACAGGGAGCGGGTTTGAGGCATGTGGTTTGGTCAATTTTTCTTGAGGATCTATAATGATTTAACAGGTGTGTCGATTTGGCGGCTAGAATCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : CCAGATGAAACTGAAACAAAACCAACACAAAAAACTAGAACCCCGATTTCTTTAAGAAGTCGGGGTTCTGAATACAAGAGTGACTGATTCTTGAGATTGGGTGAAGAGTTGGACAGATAAGGTTTGAAGAAAGCTGCTTTCTCATTGTTGACTAATTTTTGCTCAAGATGAGCGATCGCACTTAATCTGAAAAATTAACCGTATAAAATAGTACTGTTTAAGACAGATGAGTGCATCTGTTACATCGGTAGATGGGAGAACCTAACCCCTGGCCCTGTCTGTGCAGCTTCAGATGCTAAACCTCTGCTAGTTCAGAAGAGGTGGAATTGAGAGATATTATCAACTTGATAGGAGTAAAAGTATGCGAACAATTATCACAACAACAGGAACATCTTTATTGAGCAATGCTGCTCGTGAACTGAAAAAGCGTCAAAACGAGGTAACTGATGAGGAATTACGCTTTGTTTGGAAACAAGTAGGAGCAGAAGCTGCTTCAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 27351-25200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000073.1 Brasilonema sp. UFV-L1 scaffold73_cov13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 27350 36 100.0 36 .................................... GATATGGTTTTTAACTCCTCTAGCCTTTGGCTAGGA 27278 36 100.0 34 .................................... AAAAAAAGAGCGAAAGCAAGTGGTACTGACATAG 27208 36 100.0 37 .................................... GGTCAGTAGTACCTTCAGCCCCGGTGGTTTCCGTATT 27135 36 100.0 40 .................................... TAGACCAGTGGTGACCATACTCTTCACGAATATAGGCTAC 27059 36 100.0 34 .................................... AGTCCTGGGCAAAAGATTGCCTGAGAACCCTAAA 26989 36 100.0 34 .................................... GTCGTAAGGCAGCTGACACCAAATAAAACTTGCC 26919 36 100.0 33 .................................... ACTGTTAAAGGTAGCTACAAGTACAAATCCCAA 26850 36 100.0 38 .................................... CACATCTAAACCAAAACCCAAGCCAACAGCACCTCCAA 26776 36 100.0 36 .................................... AAGGTAAACTAGTTCTCTAGCTTCCTCTAAAGTCAG 26704 36 100.0 37 .................................... TCTTGCACACCGTAGTGTTGCTCGCTTCCATTTGAAT 26631 36 100.0 35 .................................... CTGCAGCTGAAAAACCTCAAGAGTCATACCAGTAG 26560 36 100.0 37 .................................... AAATTTGAAGGTACTCAACTAGCTGACATTTTTGCTC 26487 36 100.0 39 .................................... TTTCTTCACCAGCTTTAGGAGTCTTAGCCTCGCTAGGTT 26412 36 100.0 35 .................................... CATTCTTGTCCTTCTGGTAGCAATCTGCAGCTAGG 26341 36 97.2 37 ..G................................. TTTTCTTCCACGCGTGGGGAAGTAGTTCCAGGTTCTA 26268 36 100.0 38 .................................... TTGATAATATACTCCACTTAAGATTGAACCATCTACTG 26194 36 100.0 40 .................................... GTTGTTGCATCGTATCTGATACTTCAACGGCAAGAGCTCA 26118 36 100.0 40 .................................... ATTTATTCACAATTCCTGAGAAGTCCGAAATAATGATAGC 26042 36 100.0 38 .................................... ACTAATGTAGCTGCGCGGTGAGATGAAACTACGACAGC 25968 36 100.0 37 .................................... TTTTCAGGAGCAACAAAATAATGTAACCCAAGATCTA 25895 36 100.0 39 .................................... CCATGAGTTACTCCTTTTTGCGGAATGTTTTTGGTTCAG 25820 36 100.0 36 .................................... CCTGAAATGCAGGATTTTGCTTATACCCTAAATACG 25748 36 100.0 38 .................................... TTTCACAGTTTAATTTCGGTGTGAAATTTTACTCCAAA 25674 36 100.0 39 .................................... TATTGATATAGAATGTCCTACTATTGTTACCCTAGTAAT 25599 36 100.0 41 .................................... TCGATAACATTATCGACTTGCTCAAGCTGACCTTTAGAGCT 25522 36 91.7 36 ..........GA...T.................... ATTTTGACGTTTTTGAGGAGAAGAAGTTTTTTTCTT 25450 36 100.0 33 .................................... AAGAACAAATACTATAGAAGCAGCAGCTAGTTG 25381 36 100.0 38 .................................... TTTAGTGGTTGGATGATGTAAAGAGTATCGTTCTTTAC 25307 36 100.0 36 .................................... CTAAAGAAACAAACAGAGTGACTGCAACGGTTGCGA 25235 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ========================================= ================== 30 36 99.5 37 CCCTACCGATTGGGTGAAATCGGATTAGTTGGAAAC # Left flank : TATTTTCAGAAATTTCTATATAGCAGTCGTATTTGATTTGTGAGAGATGAACCGCACCAGGACAACACAGGACACAGAGGAAGGAAATGAGAATCTCACAACTGATGAGCAGATTGTTATATTGGTAGTGAGTCTCCCCAAGAACCGTCACTCGCTAGTCCCTAAGGGGGCGCTGCGCAAACGCTGCCTACGGCACGCTACGCTAACAAATTCAAAATTCGCTGCCTGCCGCAGGCAGCTAACTTTGAATTCAAAAAAGGTCAAAGTATTATGTCATACAGGTTTGAGGAATCTCAAAATTGCTTTTCAAGTGGTGCATCGACACCACTCGCCAAATCGCACCAAACCCTATATTTTTTGTTGAGTGGTGTCGATTACTTGTCGGGCAAGGGTTTGAGGTATGTATGTTGCTCAATTTTGCACAAGATATATAATGTTTTTGAGAGTGGTGTCGATTTGGCGGCTAAAACCTTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : TTTTGCTCTAATTCATATCGTAGACGCTGCCCAGATGAGCCAGTGCTGCGGGCGGGTCTCCCTCCGCAGGCATCTGGCGGTGGGCTTATAGCCCTCGGAGCAGCAACAGTCTAGAATCCCTCGTGCTTCTAGCCGGGGGAGTGTCAAAGCGCGGTAGTATTAGTAGTGATTGCAATATATTAAGGAACTTACAAGAATCATTTACAATTCTTAAAAGTAAAGGTAACAAGTTTTAGAGTAGCCAGCTGCTACCCTGCTTGCTATGCTTCTATATGCATTAAGTCAGGAAATCGCTAGGTTTGCTGCAAAAAACGTGATTTATGCGGCACAAGCTCAACGATATGTCTGGATGGACAGTGATGAACGGCATTTTGCCCATCATGTAAAAAGCAAGAGCAGCAAAAACCACTATTATAAACTGCACGAAACTGTCCTAGCCATTTGACTAATTGATTAGTATGGGTACCAATAAAAGAAGTTCAACTTGCCTAAAATAAGGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTGAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 10633-9420 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000082.1 Brasilonema sp. UFV-L1 scaffold82_cov14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 10632 38 100.0 35 ...................................... GGTAGTTTTTACAGGTAGCCTTACTATCTCAGGGG 10559 38 100.0 40 ...................................... TAAAAATTTCGCGAGAAGTAAAAACTTCTCGCGATCGCAG 10481 38 100.0 36 ...................................... GTAAGTTTGTTTGCGTTGGAATGCTGCATAGCGTGC 10407 38 100.0 35 ...................................... TTGGGATTTGGCGCGGGTTGGCGATCGTTTCATTG 10334 38 100.0 36 ...................................... AGCAGTAGCTACGTTCATGTGATGAGTTCAACTTAG 10260 38 100.0 34 ...................................... TCATTCTTGGTTAGTAAAGAACAAAACCCCTAAA 10188 38 100.0 37 ...................................... AAGAAATTCAAACATGGCTCCCAGTGCAAATTTAGTA 10113 38 100.0 38 ...................................... ACCCTTACTGGTCATTGCCAATACTCCACGAATGCAAA 10037 38 100.0 35 ...................................... CGTTTGAGTCGATTTTCTGGCTTTGACATCAAGTC 9964 38 100.0 35 ...................................... ACGTTTCCTAATCGGTCTACAGTTTCGTCTTTTGC 9891 38 100.0 34 ...................................... ATCAATGAATTCCATAACTCTGGATTCTGCTCTG 9819 38 100.0 38 ...................................... CTAGCTGTGGTGACTAGTGCGAGTTCCGATTCGATATC 9743 38 100.0 33 ...................................... ATTGCGCTGCTGAGACACACTCGTTGAAGCTAG 9672 38 100.0 35 ...................................... CTGTTCTCAAATATTTAAGAACTGCCAAAGTTAAT 9599 38 100.0 34 ...................................... TTGCAACCTTTCCTTAATATCGTACCGGGTAAGT 9527 38 97.4 32 A..................................... GTAACTTTTGATAATGAACGTGTTGATCTTAA 9457 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== ======================================== ================== 17 38 99.7 36 GGTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : CATGAGTGCAATCTTCTATGCCGCTGGTCCAGATATTCAACCAGGTAAGTTAGAGCAAGTGCATAATATTGATATAGCACCAACTATCTTACGTCTGTTGGATGTTCAGCCTGCATCGACAGTACAGGGAAAAGCACTTTTCAACTGATTCACCGCGCGGGCGTTGCACAAAGAGGGGATGAAGTATGAACCGCCAAGACGCCAAGAGCGCCAAGAAAAAAGTTTTTTAGTAAGCAAAGAAAATAAAATCATCCCACAAATATGCAACGCCACCGCGCGGATGGGTAGGTGTTAGAAAATAGGTTTTGAAAAAAATGGCTGAACTTCTGACAGCACAAGACTTTACGGGAATATTCGCTCATTACCCATCCGCGCTCCTTGTCTAGACTGGATTTCAGCCATTTGTCTGTCAATCAATTTAGTTTTTTTATGCTATCATTAGTTTATCCGCGATTTAGAACCTTGAAAACTTTATACGGAATGACTTTCTGGCTTTCGCA # Right flank : CAGCCCAAACCTTTCTTTCTCCTTCACCTTCAAGAGGTTGAAATTTCTCTTCTTCTTCTTCTCTCTGCGCCCTCTGCGCCTCTGCGGTTCGTTATAAAGCAATACGGTTGCTGTTAGGGTTGAATGATCGGAATTTCCAGTGTGTAGAGACGTTGCCCTCCGGGTATGACCTCCGGTCACGCTACGCTAACGCCAGTCGCCTGCGGAGGGAAAACGCCAGGTGCTACAACGGGGGGCTTTGGGGTCCCCTCTGGGGTTGGGGGGAGACCCCCGCAACGCACTGGCTCCCCTCCCGCAGCGCGCTTACTCACATGCAACGTCTCTTGCATTGGTTGACGGTAGATGAATTCTCTTATCTGAACCGTATTGCGTTATAAAGGTGGTAATACTTGACAATACTCTTCAATCTTCTTGAGATAATTTAACTTTGTAATTTCCGTTATCATGAGGAATAACCTTTCCTCCCAAAGTTTTTATTTCATGAATAGCTCGCTGACGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGAAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 476-2855 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMEA01000149.1 Brasilonema sp. UFV-L1 scaffold149_cov14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 476 36 100.0 37 .................................... TCCACCGGAAAGTTTGAGAGAGGTAAGCTCTCTGCTC 549 36 100.0 40 .................................... GATACAGATAGGATCTGCTTTGGCACTGCTGTATGAAATG 625 36 100.0 37 .................................... TCCAAATGGTTTAGTTCCCGCTAAAGTAGTTGCGGAA 698 36 100.0 36 .................................... TTGTTACTTTTCTAGATGGAGATCTTTCCATTAAAA 770 36 100.0 34 .................................... CATACGGTGTCAGCCGTTGTGCCCTTAGTCAAAG 840 36 100.0 35 .................................... GATAGGATCTGCTTTGGCACTAATGTTGCAATTGC 911 36 100.0 37 .................................... ATCGCAAATAATGCTTCATCATCTCCAATAACGTCGA 984 36 100.0 36 .................................... AGTTAGTTCTATTCTGGACACTAGTACATGTCTCAA 1056 36 100.0 39 .................................... CTTTGTCATCTTTATCCTTACCGTCATCGTCTGGATCTT 1131 36 100.0 42 .................................... TTTGACATACTTCTACTGTACCAGTAGATTGGGCATATGCAG 1209 36 100.0 34 .................................... CAGCAGATAAACCGATAGAAGCTAGAGCGATTTG 1279 36 100.0 35 .................................... CCAAGTCCAGGACTGTCACTAGTAATGTCAAAGAA 1350 36 100.0 31 .................................... TGCTGTGATGGCCACATCACTTCAGATAGAG 1417 36 100.0 38 .................................... AGTTTGTAACTTCTCCATACTGGTCGTATGATTGAGTG 1491 36 100.0 33 .................................... TGTTGAGCTTGATGACTAGCATAAAGTTGGTCA 1560 36 100.0 37 .................................... GGTTAGGTCCCTTAGGTTAAACTCTATAAGAATCACC 1633 36 100.0 34 .................................... GGTAGGTTGACCAGTCATTGCTGATCCACCAACG 1703 36 100.0 35 .................................... TTCCCGAAGTCTGTAGACTCTATATCTTCTTCGGA 1774 36 100.0 43 .................................... TTGGATCTACTTCGACAAGTTAGATCTTACAACAAAAAAGAGG 1853 36 100.0 37 .................................... GCAATTAATAGACCTGTAGGAGCAAACTTCAAAATTA 1926 36 100.0 42 .................................... TATTTATTAAAGCTCAAACTTAGTAGCCGTCGCGGATTACTC 2004 36 100.0 35 .................................... TCGGGCGTTCCCGCCGTCCCCATTGTAACTTCCTT 2075 36 100.0 35 .................................... ACCTGCTAAAGCTAGCAAAGTGCTAAATTCTGCTA 2146 36 100.0 36 .................................... TGAGAGGTTACCATTGAAGACTGCTTTCTCCTAACT 2218 36 100.0 40 .................................... GCATTCATAAGCCATTCGGTTAGTAATAATCATACCTCCC 2294 36 100.0 35 .................................... CAATACAGTTCTGGTCCCCTTGTTGGTTGTTAGTT 2365 36 100.0 40 .................................... GATTATTTGCTCCGTTGCTCGCATTCGAATTAGAATTAGA 2441 36 100.0 41 .................................... TTGTTGTTGTGTTTGAGCGTTTGCAGTGGAACCAAGAACAA 2518 36 100.0 39 .................................... AAAAGGAGATTTTTTCTGGAAAGAACAAAATCTGCGAAC 2593 36 97.2 37 T................................... GATAGAGCTAAGGCAGTGACATACTGGTTAGAAGCGC 2666 36 100.0 36 .................................... GATTCCCAGAGAATTGCCGGTTTCGAGCCATCCCCA 2738 36 100.0 42 .................................... GATCAAGCTAACTAACGCGTCGAGTCATCGCGATCGCACGAA 2816 36 80.6 0 ...C...............A.C....T......TGA | T,CT,C [2840,2845,2850] ========== ====== ====== ====== ==================================== =========================================== ================== 33 36 99.3 37 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GTGTGATTGGTTCTTGGGCAGATGTGCTCAACCGCGCTAACCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTGGACTTAGCTAGTGGTGATGTAGCTCCTGTTGCAATTAGCGCTCCTGCGATTAACGGTTAATCTTGAATAACATGGGGACGCGATACATCGCGTCTCTACCTTAAATAAAAAGCATCCTTCGGAAAGGGGGGATGCTTTTTTGTAGTCAAAGATATTATGTTATCTAGCTTTGGGGAAGATTAAGGGTGATTTTTAGGTGGTGCATCGACACCACTCGCCAAATCGCACCAAACCCTATATTTCTCGTTGAGTGGTGTCGATTGCTTGTAGGGCAAGCGTTTGAGGTATGTGTGTTGCTCAATTTCGTACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCCCAAATCCTTACTGGACAAGGGCTGCTAGACGAACTC # Right flank : AGAAAATGTTATACGTATAATACAGGCGCTTGACAATACTTCCTCAATATTATGGGCAACACTTTTGGGCATCTGTTTCGCATCACCACTTTCGGCGAATCCCACGGCGGCGGTGTGGGAGTTGTGATTGATGGTTGTCCTCCGCAATTAGAAATTTCTGCTGAGGAAATTCAAGTAGAACTAGATAGAAGACGTCCCGGACAAAGTAAGATTACGACGCCTCGCAAGGAAACGGACACTTGTGAGATTCTTTCTGGGGTATTTGAAGGCAAAACGCTAGGAACACCAATTTCAATTTTGGTACGAAACAAAGACACTCGCTCTCAAGATTATGATGAGATGGCGTTTAAGTATCGCCCTTCTCACGCAGATGCGACATATGACGCCAAATATGGTATCCGCAATTGGCAAGGTGGCGGGAGATCATCGGCGCGGGAGACAATTGGACGAGTTGCTGCAGGGGCGATCGCCAAAAAAATCCTCCATCAAGTCGCCAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //