Array 1 49776-51005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZK010000003.1 Streptococcus lutetiensis strain P430901 KS_59_NODE_3_length_105753_cov_756.49_ID_803, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 49776 36 100.0 30 .................................... ATATAAGTTAATTCCCTTAACATCAACGGG 49842 36 100.0 30 .................................... ATGAACCTAGGAGGTTGGGATATTGAACAT 49908 36 100.0 30 .................................... TTGTAATGACCTACACACAAGGTAGTGTCA 49974 36 100.0 30 .................................... ATACCAGAAATTTTAACAAGTTCTTTATTT 50040 36 100.0 30 .................................... AGTGAAACAACTAAAGTTGACATTAATCCA 50106 36 100.0 30 .................................... TTGTAATGACCTACACACAAGGTAGTGTCA 50172 36 100.0 30 .................................... ATACCAGAAATTTTAACAAGTTCTTTATTT 50238 36 100.0 30 .................................... AGTGAAACAACTAAAGTTGACATTAATCCA 50304 36 100.0 30 .................................... GACAGTGTACCAATTGAACTTGACCTTTCT 50370 36 100.0 30 .................................... TTACTTGTACTTCTCCACGCAGAACTATTA 50436 36 100.0 30 .................................... ATAATGAAAGTCAATACACCATCAATTACT 50502 36 100.0 30 .................................... TTTTTAAATCAACGGTAGCATCATCGTTGT 50568 36 100.0 30 .................................... CGTTCTGGCTGTAAGCTAGCCTTTCGCTAT 50634 36 100.0 30 .................................... TAATCTGTTAGCATCATTTGCTGAAACGTG 50700 36 100.0 29 .................................... AAGAGCGGTGCGATATTACGGTAAAGGTG 50765 36 100.0 30 .................................... GCGCGTAATCATCCGCGAATTCATTGCGTC 50831 36 100.0 30 .................................... AACTAAAGCAGATTATATTTTAGAAGAACT 50897 36 100.0 31 .................................... TGTAAGTTTTCATATAAAAGAACAATTGTCT 50964 36 88.9 0 ....................T...AAA......... | A,C,TAA,T [50986,50993,50996,51000] ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCATTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 51608-52435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCZK010000003.1 Streptococcus lutetiensis strain P430901 KS_59_NODE_3_length_105753_cov_756.49_ID_803, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51608 36 100.0 30 .................................... ACTGGTCTAAGTTAGGTGAATTCACTAAAA 51674 36 100.0 30 .................................... ACAATTATATTCACCGCAAGAAAGGTAAGC 51740 36 100.0 30 .................................... CGGTACAAACCTCACTTATCACACACAATA 51806 36 100.0 30 .................................... GCAAACATATGCAACAATTGATGACGCTTT 51872 36 100.0 30 .................................... TAATAATGACACACTACCAACTTCTACCAT 51938 36 100.0 30 .................................... GAAGTAATATGTTAACATCTTTTGATTATT 52004 36 100.0 30 .................................... ACACCATCAAGCAATATGATAATGTTTTGT 52070 36 100.0 30 .................................... ATTTAATTAAAGAAATGTGAATATTATCAA 52136 36 100.0 30 .................................... GAAGTAATATGTTAACATCTTTTGATTATT 52202 36 100.0 30 .................................... TCTAAAGTACGGACGCATTTTGATGGGTGC 52268 36 100.0 30 .................................... ACGTGGATAACGACAGACCCATTCCCAAGT 52334 36 100.0 30 .................................... CAGACCGCATTTCATTCCAAAGTGGTGGTT 52400 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCATTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : CTGTGGCTACTAAATATGAATACACCAAACCCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTGATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGATTTTAGCGATATTTATCGCGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAACTTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //