Array 1 846165-846665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013838.1 Streptococcus pyogenes strain MGAS11027 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 846165 36 100.0 30 .................................... TATCACTAACTCCCTATTGCGTGGGGAACT 846231 36 100.0 30 .................................... TGTTTCTTGCAATCGCAATATTTGGGATGA 846297 36 100.0 30 .................................... ACAGAATCATAAGTTCCTGTCATGCCGTAT 846363 36 100.0 30 .................................... GTCCAAACAAGATTGAAATACCATACGTGA 846429 36 100.0 30 .................................... TTAGAGGCCTATTTCACAGACAAAGACATC 846495 36 100.0 30 .................................... CTGATAAGGATGGCAACCGCATCAGTATTT 846561 36 100.0 30 .................................... GACTCATCCCAACTACCGTAAGCCCTAAAG 846627 36 94.4 0 ..................C.............C... | T,TT [846656,846660] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACCAAGAAAAAGTTAGTCGTCTTTGTCAATAGCGGAGCTTTTCTAACAAAAGAGGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGCAGTAATACAGGGGCTTTTCGAGATTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCACTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTAAGTGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTAGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTCGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGCCTCATTCAAGAGACTCTGCTAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 2 1223680-1222781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013838.1 Streptococcus pyogenes strain MGAS11027 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1223679 32 100.0 34 ................................ ACCAATAATTCTAAAGTCGCTATCTCTATCTACG 1223613 32 100.0 33 ................................ TTATAATACAACCAATAGACATAATCTAGAATC 1223548 32 100.0 37 ................................ AAACTATGTGACTGACACTCTGGACTATGTCAAATAC 1223479 32 100.0 34 ................................ TGCTGTAGGTAAAGCCGATAATAACTGGGGCGGA 1223413 32 100.0 36 ................................ AATAATAAGGCAATGCTAGTCGAGTACGCCAACAAA 1223345 32 100.0 33 ................................ AAAAAAATAGCTAAGATCGCTACTGTGTCTGCT 1223280 32 100.0 35 ................................ ATGTAATCCTGTTGTTAACTTGTCAAAGTCATAGA 1223213 32 100.0 35 ................................ AAAAACAAATCGTTATCAATTTGCGTCTTTCCAGC 1223146 32 100.0 34 ................................ GATTCCCCCACGAAGCAAACAAGAATTCACAGTC 1223080 32 100.0 35 ................................ GAAAAAAGAGTAGGAGTATAACATGAAACTATTAG 1223013 32 100.0 37 ................................ ACGTAAAATATTAATCAGTGTTGATTTACCAGTAACC 1222944 32 93.8 34 .......TT....................... AAATTTGGCGAGGAGAGCGTGAGGCGAATCTAGT 1222878 32 100.0 34 ................................ ATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA 1222812 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.3 35 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGAACTATGGACAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : ATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGAGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCTTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //