Array 1 42893-43958 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQA01000015.1 Escherichia coli strain MOD1-EC6861 MOD1-EC6861_15_length_114045_cov_60.8913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42893 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 42954 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 43015 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 43076 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43137 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43198 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 43259 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43320 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43381 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43442 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43503 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43564 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43625 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43686 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43747 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 43808 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 43869 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43930 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69658-71089 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQA01000015.1 Escherichia coli strain MOD1-EC6861 MOD1-EC6861_15_length_114045_cov_60.8913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69658 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 69719 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 69780 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 69841 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 69902 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 69963 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 70024 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 70085 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 70146 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 70207 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 70268 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 70329 29 96.6 32 .............A............... GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70390 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70451 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70512 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70573 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70634 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70695 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70756 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70817 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70878 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 70939 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 71000 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 71061 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //