Array 1 25754-25290 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386937.1 Niveispirillum irakense DSM 11586 G473DRAFT_scaffold00018.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 25753 37 94.6 33 .......G............................T TGACGTTGTTTCGATCATCGCCAGTGACATTAA 25683 37 97.3 34 .......G............................. CAGGCCCATCAGCTCGCATTTTGTGTCTGTCTGT 25612 37 100.0 36 ..................................... ATCCTCCGAGTGGTTGTTAGGTTCGACCTCGGATTT 25539 37 100.0 35 ..................................... TCAGTGAGCTTGCAATGAGGTTTACACCTATTACA 25467 37 100.0 33 ..................................... TTCAAAAATCCGCCGATGATAAGCTTGAAGACT 25397 37 100.0 34 ..................................... GGATAAATTGAAATAAAAAATATTTGAATCCCAA 25326 37 94.6 0 ..........A........................G. | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 98.1 34 GTTCAGCACCGTTCCGCGATTGGAAGCGGATTGAAAC # Left flank : GTCATCCATTTCCGTGGGGCCGGAAAGGTAGAGCTTCAGCGTTTCGCGGACAGGGCGAACCCAGTCCAGTCCGGGCACCTCAACAATGATGAGGCAGCCGCCCTTGTCAAGGGCGTCCGCGATCTGCGGGGATGCGGCCAGGCCGCGATCCAACAGTGCCCACGCGGTGGCGCAGTCACCGGTCGTAACCGTCGGAGAAGGGCGTGGGGCCTGCTCCAACTCGAGGGAAGCGGCAACGCGGGCGTTGTATTGTTTGGCGGCCACGGCCAGGGTGGTCGGGGCCTTGTCAGCAGTATGGGTCATGTTTGGCCTCTCAACAGGCAAAGGGGGGGTGTTCCTGCCGATGAATGGTCGGCAGGCGATGTGGATGGGCATAGGGGCGCACGCCTGATAATGCGGGCACGGGGAAGGCGGTGGCCGGCTTCCAGGGGCGACGACGATTGCTCTATGCGGAGAAGGGGGCCGTGAGGGTGAAGGTCACGGACCAGAAGGCGTGCACA # Right flank : CGGGTCAAGACGGCAGGAATGGTCATTCCCCGCATTCCGGGCGGGCTCTGCGTGGGCCGGAAAAACCCGCCGGAGCGTCCGGGTGGGTTTGGCCCTGGTGTGCGGGGGATAATTTCCCAACCTATGCCCGTCACAATCCTGTTCCTGAATCCACTTCCCACAACACAACCCCTATGGCACGATCCCCCGCAGTTGCATGAATTGGGGCGCAGGGTATGGGGCGTTTTCTGCTGTGGGTAGAGGGGGTGGATTTCGATGCCACCCTTTATGACACGACCGATCTGTCCTGTATCCGGGGTTCCGGTCTGGCCTTGCTGTATGCCCCCAGCCGGGTGCAGGTTCTGCTGAAAGGGGTTGACGGTGTTTCTTCGGTCAACCGGCTATTCGCTGGCGCTTCCCTGGCCGCCCTGACCTTTGATGCTGAACCGGCGGTGGCCCGGAATGCCCTGGCCCACCTGCGGGCCGCCCTGGCCCATGAAGGGGCGGATTGGTGCGGCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGCACCGTTCCGCGATTGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : NA // Array 1 121362-120966 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386935.1 Niveispirillum irakense DSM 11586 G473DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 121361 36 94.4 31 .T.................A................ TGCATCGTGATCGCGACCCAGATATCAGAAT 121294 36 100.0 37 .................................... CGCAGGGTGCCGCGATGGTTAAATTCACCCATCGTAC 121221 36 97.2 39 ...................A................ GGTGGGTAAGGTCGGGCTCGTGCATGGTGTGGTACCCCC 121146 36 94.4 36 .......A...........A................ CACCGGTGGGGGGCTCTACATGCGCACCCCTATCAG 121074 36 100.0 37 .................................... CACGCATCCCACGGTGATCCCGCCCCGCCGATGACGG 121001 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 97.7 36 GCTTCAATGAGGCCCCGGCGTTTCAGCCGGGGAAAG # Left flank : ACCGGCTGGATGATTATGGGCTGGAGGAATTATCCCGGTCCTGCGACCTGTATTACTGGGCCAGCCGCAAATTCGCCCGCCTGTTCCCCGACCGCAAGGCGGTGGAGGAACGCCGCGCCCAGGTGGCGGGCCGCCTGTCGGAACTGCTGGCCAGCACGGCGCGCCGCCGCCAGCAGGGTAAAGGCCCGCGCCCCGGTGGCGGGGGCGGCGGCAAACCCGCCAAACCCCCTGCCGGATTCCGTGGCGCACCGCGCAAACGCTATGGGCCGAAGCGGGGGTAGGGTGGGAGGCGGACGGTTGATAAGTTTGCCGCGTCCGGGAGGGGTGCGGAAACGGGATTGAGGATAGGCATATCCTGTCTTCGAGCCGGCCCGCACAGGCTTTCGGTCTGCCGGCGGTATCGTGGTCGCTATCCCCAACTGCGTGCCGATTGATCCCCGTTTCGCGAAGACCAGCCCGTGCTATCGCCTCCGCAGCCCGCTAAAGCGGGGTTTATGACG # Right flank : AATGGAATGCGTTGGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGTTTCAGCCGGGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-13.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 38372-37814 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386936.1 Niveispirillum irakense DSM 11586 G473DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 38371 36 100.0 37 .................................... GAACACAAAAGTGCCCCTCCGATAGTGTACGGATTTG 38298 36 100.0 37 .................................... GTAGTTGCCGTTCGGGTTGACAATCTCGAACATATAC 38225 36 100.0 38 .................................... ACGCAGTAACGATCTCGTATCTGACTGACGAGTGAGCC 38151 36 100.0 41 .................................... CGCAGGCGATAGATGGCCGATGATGCTGCCGCCAGCCCGGC 38074 36 100.0 39 .................................... GACGTCGAATTCTGGCTGAAGGCGAAATAGGCCAGCGCC 37999 36 100.0 39 .................................... CAGCCCTCTGGTTATACCAGCAAGGGTTTTCCCCGCCGT 37924 36 97.2 39 ...........T........................ TTCGGCGGCGGCGACGTATTTTGCGATTACGTCGTTGTC 37849 36 94.4 0 ...........T....C................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 99.0 39 CTTTCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : ATAATGAACGGCTCTACATCGTCACCTATGACATTGCCGATCAAAAGCGCTGGCGGCAGGTGTTCAAAGTGATGGAGGCCTATGGCGACTGGCTGCAACTATCCGTCTTTCAATGCCGCCTGACCGCCCGCCGCCGCGCGGCGCTGGCCATGCGGCTTGACCGGGAGATCAAGCCATCGGAAGATCACGTCCTGATCCTCGATATCGGCCCCGCCGACAATGTGGATCTGGCTGTCGAAAGCCTGGGCAAAAGCTTCAAGGCAATCGAACGGCAAGCCAGGGTGATTTAACGGGTTCTGCCGGTCGCTGGCGCGAGCGGCTCAGTACCCGCCAAAACCCGGGACCCGCTCGCAAGCGCCCAAGTGATTGGGATTGCTATGGCTCTTGGACATGGTACATGTTTTTGACACCCCGTTGGGCACGCCAAAACCCCTGCCCTCAGGACCGGCTCGCAAATCCGGCAATTTCTTGTTATCCTGCAAGCGGTTCCAAGGGGGGCC # Right flank : CAGCCCTCCCCGCTGGCTTCCCCACATGATCAGGCCATTTTTCCACCGGGCGCACGAACGGGCCATTTCATCTGCGCCGGCCACCAGCCCCCAAAGCAGGCTGCAGTGCGATGCCGGTCTCCAGCAGGCTGGCGAGTTCGTGCATCAACGACAACCGACCCACCGCCATCCGCACAGGCGGGCGGAACAGGCCGCGCCGCCTTTCCGCCGTTGATGCACCGCTGTGCAACGTTGCACACCCCGCCCCCGGCCCTTCCCATCCTGAAAAGTTGACATTCCGCCGTCAACCTGATTGACAACCCCCTGCCCCTGCCCCCACTTTGCATCCGGTTGCTCCGGTTAAGGGTTGGGTGATGGCGGGAGATACATTGAAAGCGTTCCGCAAACGCAAAGGGCTGACGCAGGAAGGCTGCGCCCGTCACCTGAACGAGGCGTTGGGCCGGTCCTATGACAAGGCGCGGATCAGCCGGTGGGAAAGCGGCAAGGAGGCGGTCCCCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 41143-40879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386936.1 Niveispirillum irakense DSM 11586 G473DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 41142 36 100.0 43 .................................... TGGCCTGGGGAGAGGATGGGTGGGTGCCCGCCTACAAGAGGCG 41063 36 100.0 39 .................................... GTACGGCCCTCCTATTGCCGGACAAGGCTGGATTTTCAT 40988 36 100.0 38 .................................... ATATGCATCGAATTTGTTTAATTTTGTCAGATATACCC 40914 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== =========================================== ================== 4 36 99.3 40 CTTTCCCCGGCTGAAATGCCGGGGCCTCATTGAAGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCCGACTCTGG # Right flank : CGGTTGATCTGGCGGCGCATCGCTACCCTAACCAGCCGGGTTTCCGGTTCTACCGACACGCCAACCCCGCCTCGCCCTCTCCACATCTGATTAAGCGTGAATTCCGCCAGGGCTGTGCTACCATAACCCTGCACAACCATTGCGTGGTGATGCCCATGGTGGATGATCCTGCACCGGATGAAACCGGACCAGAACCAGCCCCCTCCCCCGCATATCCGCGCGCGGTGCAATTGTCGCTGGCCCTGCCGGCCCCGGCGGTGGGGATTGATGATGTGCTGGTACCGGCGCGGATGATCAATGAATGGGTTTATTGTCCGCGTCTGGCCTATCTGGAATGGGTGGAAGGGGAATGGGCCGATAGTGGCGATACAGAGGAAGGACGGCGGGTGCATGCCCGTGTGGATGCCGCCCGCCCTGCCCTGCCCCCACCGGAGGACGTGACGGAGGAGAGCCACCCTTTCACCACGCGGTCGGTGGAGCTTTCGTCCGACCGGCTGGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCCGGCTGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.50,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //